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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
LWLGLRAVLVVAGLAVLLQLIRGWLSSKSYVFNREEIARLAKEHSGLDYEVAFSKIIVELRKKHPGHILQDEDLQWVFVN
AGGWMGSMCLLHASLTEYVLLFGTAVDTGGHSGRYWAEISDTILSGTFRQWKEGTTKSEIFYPGDTIVHEVGEATSVQWS
SGTWMVEYGRGFIPSTLAFALADTIFSTQDFLTLFYTVKVYSKALLLEASTHLSQ

The query sequence (length=215) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8wue:A 226 215 1.0000 0.9513 1.0000 4.78e-158 7w2c:A, 7w2c:C, 7w2c:E, 7w2c:B, 7w2c:D, 7w2c:F, 7w2c:G, 7w2c:H, 7w2c:I, 7w2c:J, 7w2c:K, 7w2c:L, 7w2d:A, 7w2d:C, 7w2d:E, 7w2d:B, 7w2d:D, 7w2d:F, 7w2d:G, 7w2d:H, 7w2d:I, 7w2d:J, 7w2d:K, 7w2d:L, 7w2f:A, 7w2f:B, 7w2f:C, 7w2f:D, 7w2f:E, 7w2f:F, 7w2f:G, 7w2f:H, 7w2f:I, 7w2f:J, 7w2f:K, 7w2f:L, 7w2g:A, 7w2g:B, 7w2g:C, 7w2g:D, 7w2g:E, 7w2g:F, 7w2g:G, 7w2g:H, 7w2g:I, 7w2g:J, 7w2g:K, 7w2g:L, 7w2h:A, 7w2h:C, 7w2h:E, 7w2h:B, 7w2h:D, 7w2h:F, 7w2h:G, 7w2h:H, 7w2h:I, 7w2h:J, 7w2h:K, 7w2h:L, 7w2h:M, 7w2h:N, 7w2h:O, 7w2h:P, 7w2h:Q, 7w2h:R, 7w2h:S, 7w2h:T, 7w2h:U, 7w2h:V, 7w2h:W, 7w2h:X, 8w4b:A, 8w4c:A, 8wue:B, 8wue:C, 8wue:D, 8wue:E, 8wue:F, 8wwb:A
2 6djz:B 221 195 0.6558 0.6380 0.7231 2.00e-108 6djz:A, 6djz:C, 6dk0:A, 6dk0:B, 6dk0:C, 6dk1:A, 6dk1:B, 6dk1:C, 5hk1:A, 5hk1:B, 5hk1:C, 5hk2:A, 5hk2:B, 5hk2:C
3 8iza:A 1246 116 0.1488 0.0257 0.2759 0.47 8iz7:A, 8iz9:A, 8xok:A
4 8i4a:A 1218 116 0.1488 0.0263 0.2759 0.52 8bwo:A, 8i4c:A, 8j3w:A, 8j3z:A, 8xol:A, 8xom:A
5 8bjf:A 1195 116 0.1488 0.0268 0.2759 0.53 8bwp:A, 8bwq:A, 8bwr:A, 8sx7:A, 8sx8:A, 8sxb:A
6 5dds:A 514 43 0.0512 0.0214 0.2558 2.5 5dds:B, 5dds:C, 5dds:D, 5ddu:A, 5ddu:B, 5ddu:C, 5ddu:D, 5ddw:A, 5ddw:B, 5ddw:C, 5ddw:D, 6jc7:A, 6jc7:B, 6jc7:C, 6jc7:D, 6jc8:A, 6jc8:B, 6jc8:C, 6jc8:D, 6jc9:A, 6jc9:B, 6jc9:C, 6jc9:D, 8jt3:A, 8jt3:B, 8jt3:C, 8jt3:D
7 1i7e:A 237 93 0.1163 0.1055 0.2688 2.7
8 6tdz:C 530 86 0.1070 0.0434 0.2674 3.3 6tdu:AA, 6tdu:AB, 6tdu:AC, 6tdu:BA, 6tdu:BB, 6tdu:BC, 6tdy:A, 6tdy:B, 6tdy:C, 6tdz:B, 6tdz:A, 6te0:C, 6te0:A, 6te0:B
9 4wjw:B 673 20 0.0558 0.0178 0.6000 3.3
10 6ulw:A 1193 27 0.0558 0.0101 0.4444 3.8 6ulw:D, 6ulx:A, 6uly:A, 6uly:B
11 3fg8:A 106 83 0.1070 0.2170 0.2771 5.6 3fg8:B, 3fg8:C, 3fg8:D, 3fg8:E, 3fg8:F
12 7kis:A 458 42 0.0605 0.0284 0.3095 6.5 7kis:B
13 6j79:A 816 65 0.0930 0.0245 0.3077 8.2 1amo:A, 1amo:B, 1b1c:A, 1dve:A, 1dvg:A, 1dvg:B, 2dy5:A, 2e7e:A, 5emn:A, 5emn:B, 3es9:A, 3es9:B, 3es9:C, 5fa6:A, 5fa6:B, 4g7l:A, 4g7p:A, 4g7t:A, 4g7u:A, 4g8p:A, 4g8u:A, 4g8w:A, 4g98:A, 4g99:A, 3i9t:A, 3i9u:A, 1ivj:A, 1ix3:A, 1ix4:A, 1j02:A, 1j2c:A, 6j79:B, 6j7a:A, 6j7a:B, 6j7i:A, 6j7i:B, 1j9z:A, 1j9z:B, 1ja0:A, 1ja0:B, 1ja1:A, 1ja1:B, 7l18:AAA, 7l18:BBB, 4mec:A, 4mec:B, 4mec:C, 4mec:D, 4mec:E, 6njr:A, 6njr:B, 3ojw:A, 3ojx:A, 3qe2:A, 3qe2:B, 3qfc:A, 3qfc:B, 3qfr:A, 3qfr:B, 1ubb:A, 1ulx:A, 5urd:A, 5urd:B, 5ure:A, 5ure:B, 5urg:A, 5urg:B, 5urh:A, 5urh:B, 5uri:A, 5uri:B, 1vgi:A, 3wkt:A, 3wkt:B, 3wkt:C, 3wkt:D, 4y7c:A, 4y7c:B, 4y9r:A, 4y9r:B, 4y9u:A, 4y9u:B, 4yaf:A, 4yaf:B, 4yal:A, 4yal:B, 4yao:A, 4yao:B, 4yau:A, 4yau:B, 4yaw:A, 4yaw:B, 2zvu:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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