Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
LVSRAAIAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPADDNHSFGHGKAESLAALAQS
MFISGSALFLFLTGIQHLISPTPMTDPGVGVIVTIVALICTIILVSFQRWVVRRTQSQAVRADMLHYQSDVMMNGAILLA
LGLSWYGWHRADALFALGIGIYILYSALRMGYEAVQSLLDRALPDEERQEIIDIVTSWPGVSGAHDLRTRQSGPTRFIQI
HLEMEDSLPLVQAHMVADQVEQAILRRFPGSDVIIHQDPCSVV

The query sequence (length=283) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2qfi:A 286 283 1.0000 0.9895 1.0000 0.0 3h90:A, 3h90:B, 3h90:C, 3h90:D, 2qfi:B
2 8f6k:B 287 282 0.4770 0.4704 0.4787 2.53e-79 8f6e:A, 8f6e:B, 8f6f:A, 8f6f:B, 8f6h:A, 8f6h:B, 8f6i:B, 8f6i:A, 8f6j:B, 8f6j:A, 8f6k:A, 8f6k:C, 8f6k:D, 7kzz:B, 7kzz:A, 5vrf:B, 5vrf:A
3 3byr:A 89 85 0.1025 0.3258 0.3412 6.96e-12
4 8j80:B 288 149 0.1272 0.1250 0.2416 2.58e-05 8j7u:A, 8j7u:B, 8j7w:A, 8j7w:B, 8j7y:A, 8j7y:B
5 6vda:A 86 71 0.0707 0.2326 0.2817 6.85e-05
6 8zsz:A 315 106 0.0989 0.0889 0.2642 0.003 8zsb:A, 8zsb:B, 8zsz:B
7 7y5g:B 302 276 0.2014 0.1887 0.2065 0.003 7y5g:A, 7y5h:B, 7y5h:A
8 1t6c:A 306 52 0.0530 0.0490 0.2885 1.4 2j4r:A
9 6xpd:B 303 223 0.1519 0.1419 0.1928 1.4 6xpd:A, 6xpe:B, 6xpe:A
10 6yw5:WW 353 138 0.1307 0.1048 0.2681 2.9 6ywe:WW, 6ywx:WW, 6ywy:WW
11 2obe:A 915 49 0.0565 0.0175 0.3265 3.7 2obe:B, 2obe:C
12 2bon:A 287 170 0.1237 0.1220 0.2059 4.4
13 6h5k:A 91 57 0.0495 0.1538 0.2456 6.3 6g55:A, 6h5m:A, 6h5u:B, 6h5u:A, 6h5u:C, 6h87:A, 5hsp:A
14 6sga:F3 888 89 0.0777 0.0248 0.2472 6.6 7pub:F3, 6sgb:F3
15 7pua:F3 911 89 0.0777 0.0241 0.2472 6.9
16 7vno:A 452 40 0.0389 0.0243 0.2750 8.1 7vno:B, 7vnt:A, 7vnt:B, 7vo1:A, 7vo1:B
17 5ho1:A 86 44 0.0424 0.1395 0.2727 8.4 5ho1:B
18 7tau:A 951 49 0.0530 0.0158 0.3061 9.0 7tau:C, 7tau:D, 7tau:E, 7tau:F, 7tau:H, 7tau:I, 7tau:G, 7tau:K, 7tau:L, 7tau:J, 5tx1:A, 5tx1:C, 5tx1:D, 5tx1:E, 5tx1:F, 5tx1:H, 5tx1:I, 5tx1:G, 5tx1:J, 5tx1:L
19 3n9m:A 503 96 0.0989 0.0557 0.2917 9.7 3n9l:A, 3n9m:C, 3n9n:A, 3n9o:A, 3n9p:A, 3n9q:A, 3puq:A, 3puq:C, 3pur:A, 3pur:C

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218