Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
LVPRGSHMKSLGYTDNYTFASMLFDPGKLDSDDALNSNIIPFDLHSYMSGNRYKIDLKLDPIIAEHVTKISANPSGSNKP
VEFVRNKDENGNLTDTWEVNFIRANDGLFGGLSQYTAKNGKIELDDTVGNIISNAGNLSNNKLNHQVFVRDSRENKIVRT
SESSGYFLTKADDDLVNLENNVSTENNNAFKASSGSATYNENVGEFGGILIDQQIMKNGIFSYSKTKANQWAYNYQIDKD
LLPYIEGVELHQYKNYDAKNKVADLTIDEVGNGTITSDNLNKLIEFNNALPETVGVRVVLKLNKSVNNILTKDAKYDSEG
NLIRETTKQKEDFTFAGYLTDSKGALINNTLGTSTLALQDYDKDGLLDRYERQLSLSDAENEDTDGDGKNDGDEVVNYKT
SPLVGKPQAADITTEDTVVSGSVPLKEGAATQTAKVINAEGTTVGTATVNSDGTFSVSIPNSPEGTYTIAIDSPNYDNDE
VNTFEIVDNSKLPAPSINPVDDNDQQIVVNGTSGSTVTVTDSNNNVLGTVTIPADDTSAAINVTPLEAGTVLTSTASKDG
KTSDVSDQITVTDATAP

The query sequence (length=577) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7c7u:A 579 579 1.0000 0.9965 0.9965 0.0 7c7r:B, 7c7r:A, 7c7u:B
2 6ori:A 381 386 0.2357 0.3570 0.3523 1.18e-54
3 4bbl:B 399 117 0.0520 0.0752 0.2564 0.90 4bbl:W, 6i85:A, 6i85:C
4 6wn9:A 155 112 0.0537 0.2000 0.2768 1.3 6wn9:B
5 5v2d:A 488 67 0.0329 0.0389 0.2836 2.3 5v2d:B, 5v2d:C, 5v2d:D
6 8uar:A 352 15 0.0191 0.0312 0.7333 4.0 6ffx:A, 6ffx:B, 6ffx:C, 6ffx:D, 6ffz:A, 6ffz:B, 6ffz:C, 6ffz:D, 6fg0:A, 6fg0:B, 6fg0:C, 6fg0:D, 3jv7:A, 3jv7:B, 3jv7:C, 3jv7:D, 5o8h:A, 5o8h:B, 5o8h:C, 5o8h:D, 5o8q:A, 5o8q:B, 5o8q:C, 5o8q:D, 5o8q:E, 5o8q:F, 5o8q:G, 5o8q:H, 5o9d:A, 5o9d:B, 5o9d:C, 5o9d:D, 5o9f:A, 5o9f:B, 5o9f:C, 5o9f:D, 5od3:A, 5od3:B, 5od3:C, 5od3:D, 8uar:B, 8uar:C, 8uar:D, 8uar:E, 8uar:F, 8uar:G, 8uar:H, 8uar:I, 8uar:J, 8uar:K, 8uar:L, 8uas:A, 8uas:B, 8uas:C, 8uas:D, 8uas:E, 8uas:F, 8uas:G, 8uas:H, 8uas:I, 8uas:J, 8uas:K, 8uas:L, 2xaa:A, 2xaa:B, 2xaa:C, 2xaa:D
7 4dpv:Z 559 133 0.0555 0.0572 0.2406 6.7 1c8d:A, 1c8f:A, 1c8g:A, 1ijs:P, 1p5w:A, 4qyk:K, 4qyk:V, 4qyk:E, 4qyk:J, 4qyk:S, 4qyk:B, 4qyk:c, 4qyk:W, 4qyk:H, 4qyk:I, 4qyk:T, 4qyk:L, 4qyk:M, 4qyk:C, 4qyk:R, 4qyk:A, 4qyk:b, 4qyk:Y, 4qyk:d, 4qyk:F
8 3pmo:A 357 14 0.0191 0.0308 0.7857 6.9 6uec:A
9 5yp2:A 724 40 0.0260 0.0207 0.3750 8.2 5yp2:B, 5yp3:A, 5yp3:B, 5yp3:C, 5yp3:D, 5yp4:A, 5yp4:B, 5yp4:C, 5yp4:D

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218