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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
LVPEKEKDPKYWRDQAQETLKYALELQKLNTNVAKNVIMFLGDGMGVSTVTAARILKGQLHHNPGEETRLEMDKFPFVAL
SKTYNTNAQVPDSAGTATAYLCGVKANEGTVGVSAATERSRCNTTQGNEVTSILRWAKDAGKSVGIVTTTRVNHATPSAA
YAHSADRDWYSDNEMPPEALSQGCKDIAYQLMHNIRDIDVIMGGGRKYMYPKNKTDVEYESDEKARGTRLDGLDLVDTWK
SFKPRYKHSHFIWNRTELLTLDPHNVDYLLGLFEPGDMQYELNRNNVTDPSLSEMVVVAIQILRKNPKGFFLLVEGGRID
HGHHEGKAKQALHEAVEMDRAIGQAGSLTSSEDTLTVVTADHSHVFTFGGYTPRGNSIFGLAPMLSDTDKKPFTAILYGN
GPGYKVVGGERENVSMVDYAHNNYQAQSAVPLRHETHGGEDVAVFSKGPMAHLLHGVHEQNYVPHVMAYAACIGANLGHC
APA

The query sequence (length=483) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7yiv:A 484 483 1.0000 0.9979 1.0000 0.0 7yiv:D, 7yiv:C, 7yiv:B, 7yiv:G, 7yiv:H, 7yiv:F, 7yiv:E, 7yiw:A, 7yiw:D, 7yiw:C, 7yiw:B, 7yiw:G, 7yiw:H, 7yiw:F, 7yiw:E, 7yix:A, 7yix:B
2 4kjg:A 486 475 0.5797 0.5761 0.5895 0.0 4kjd:A, 4kjd:B, 4kjg:B
3 3mk0:A 481 475 0.5652 0.5676 0.5747 0.0 1ew2:A, 2glq:A, 3mk1:A, 3mk2:A, 1zeb:A, 1zed:A, 1zef:A
4 1k7h:A 476 486 0.4472 0.4538 0.4444 5.89e-134 1k7h:B, 1shn:A, 1shn:B, 1shq:A, 1shq:B
5 7qow:B 505 347 0.2298 0.2198 0.3199 2.85e-33 3e2d:A, 3e2d:B, 7qow:A, 7qp8:A, 7qp8:B, 6qsq:A, 6t26:A, 6t26:B, 7yzz:A, 7yzz:B, 7z00:B
6 1ajb:A 449 364 0.2381 0.2561 0.3159 3.68e-31 1ajb:B, 1ajc:A, 1ajc:B, 1ajd:A, 1ajd:B, 1alh:A, 1alh:B, 1ali:A, 1ali:B, 1alj:A, 1alj:B, 1alk:A, 1alk:B, 1ani:A, 1ani:B, 1anj:A, 1anj:B, 2anh:A, 2anh:B, 1b8j:A, 1b8j:B, 3bdh:A, 3bdh:B, 5c66:A, 5c66:B, 3cmr:A, 3cmr:B, 3dpc:B, 3dpc:A, 3dyc:A, 3dyc:B, 1ed8:A, 1ed8:B, 1ed9:A, 1ed9:B, 1elx:A, 1elx:B, 1ely:A, 1ely:B, 1elz:A, 1elz:B, 1ew8:A, 1ew8:B, 1ew9:A, 1ew9:B, 2g9y:A, 2g9y:B, 2ga3:A, 2ga3:B, 1hjk:A, 1hjk:B, 1hqa:A, 1hqa:B, 1kh4:A, 1kh4:B, 1kh5:A, 1kh5:B, 1kh7:A, 1kh7:B, 1kh9:A, 1kh9:B, 1khj:A, 1khj:B, 1khk:A, 1khk:B, 1khl:A, 1khl:B, 1khn:A, 1khn:B, 4km4:A, 4km4:B, 3tg0:A, 3tg0:B, 3tg0:C, 3tg0:D, 5tpq:A, 5tpq:B, 1ura:A, 1ura:B, 1urb:A, 1urb:B, 1y6v:A, 1y6v:B, 1y7a:A, 1y7a:B, 4yr1:A, 4yr1:B
7 7tm9:A 441 359 0.2257 0.2472 0.3036 5.81e-29 7tm9:B, 7tm9:C, 7tm9:D, 7tm9:E, 7tm9:F, 7tm9:G, 7tm9:H
8 3wbh:A 497 347 0.2174 0.2113 0.3026 4.45e-28 3wbh:B
9 2w5v:A 346 343 0.1946 0.2717 0.2741 9.11e-22 2iuc:A, 2iuc:B, 2w5v:B, 2w5w:A, 2w5w:B, 2w5x:A, 2w5x:B
10 3a52:A 400 457 0.2567 0.3100 0.2713 3.56e-20 3a52:B
11 7kwd:A 473 334 0.1925 0.1966 0.2784 1.13e-19 7kwd:B
12 2x98:A 430 358 0.2070 0.2326 0.2793 1.97e-17 2x98:B
13 8k86:A 63 44 0.0311 0.2381 0.3409 0.35 8k86:B, 8k8a:A, 8k8a:B
14 6mkh:A 445 78 0.0580 0.0629 0.3590 0.94 6bsr:A, 6mki:A
15 8g1e:A 1037 60 0.0414 0.0193 0.3333 2.8 8g1e:B, 8g1e:D, 8g1e:C, 8g1f:A, 8g1f:C, 8g1f:B, 8g1f:D, 8g5c:A, 8g5c:B, 8g5c:C, 8g5c:D, 8g5d:A, 8g5d:B, 8g5d:C, 8g5d:D, 6hxh:A, 6hxh:B, 6hxh:C, 6hxh:D, 6hxh:E, 6hxh:F, 6hxh:G, 6hxh:H, 6hxk:A, 6hxk:B, 6hxk:C, 6hxk:D, 6hxl:A, 6hxl:B, 6hxl:C, 6hxl:D, 6hxl:E, 6hxl:F, 6hxl:G, 6hxl:H, 6hxm:A, 6hxm:B, 7liw:B, 7liw:D, 7lj9:A, 7lj9:B, 7lj9:C, 7lj9:D, 7lla:A, 7lla:C, 7lla:B, 7lla:D, 3mwe:A, 6o0h:A, 6o0h:B, 6o0h:C, 6o0h:D, 3pff:A, 6poe:B, 6poe:D, 6poe:A, 6poe:C, 6qfb:A, 6qfb:B, 6qfb:D, 7rig:A, 7rig:C, 7rig:B, 7rig:D, 7rkz:A, 7rkz:C, 7rkz:B, 7rkz:D, 7rmp:A, 7rmp:C, 7rmp:B, 7rmp:D, 5tde:A, 5tde:B, 5tdf:A, 5tdm:A, 5tdm:B, 5tdz:A, 5te1:A, 5te1:B, 5teq:A, 5teq:B, 5tes:A, 5tet:A, 6ui9:A, 6ui9:C, 6ui9:B, 6ui9:D, 6uia:C, 6uia:A, 6uia:D, 6uia:B, 6uuw:A, 6uuw:C, 6uuw:B, 6uuw:D, 6uuz:A, 6uuz:C, 6uuz:B, 6uuz:D, 6uv5:A, 6uv5:C, 6uv5:B, 6uv5:D, 6z2h:A, 6z2h:C, 6z2h:D
16 6qfb:C 1011 60 0.0414 0.0198 0.3333 4.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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