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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
LVMEAQPEWLRAEVKRLSHELAETTREKIQAAEYGLAVLEEKHQLKLQFEELEVDYEAIRSEMEQLKE

The query sequence (length=68) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6pse:A 78 68 1.0000 0.8718 1.0000 4.56e-42 6pse:B
2 6gsj:75 140 50 0.1912 0.0929 0.2600 0.55 5a9z:AQ, 5aa0:AQ, 7azo:L19A, 7azo:L19B, 7azs:L19A, 7azs:L19B, 9b00:1T, 9b00:2T, 6b4v:Q, 6b4v:UB, 6boh:Q, 6boh:VB, 6bok:Q, 6bok:TB, 6buw:RT, 6buw:YT, 6bz6:RT, 6bz6:YT, 6bz7:RT, 6bz7:YT, 6bz8:RT, 6bz8:YT, 6c5l:BT, 6c5l:DT, 6cae:1T, 6cae:2T, 6cfj:1T, 6cfj:2T, 6cfk:1T, 6cfk:2T, 6cfl:1T, 6cfl:2T, 8cvj:1T, 8cvj:2T, 8cvk:1T, 8cvk:2T, 8cvl:1T, 8cvl:2T, 5czp:YT, 5czp:RT, 6czr:1T, 6czr:2T, 5d8b:N, 5d8b:JB, 5dfe:YT, 5dfe:RT, 5dox:1T, 5dox:2T, 5doy:1T, 5doy:2T, 5e7k:B8, 5e7k:75, 5e81:B8, 5e81:75, 8ekb:1T, 8ekb:2T, 5el4:B8, 5el4:75, 5el5:B8, 5el5:75, 5el6:B8, 5el6:75, 5el7:B8, 5el7:75, 8ev6:1T, 8ev6:2T, 8ev7:1T, 8ev7:2T, 5f8k:1T, 5f8k:2T, 8fc1:1T, 8fc1:2T, 8fc2:1T, 8fc2:2T, 8fc3:1T, 8fc3:2T, 8fc4:1T, 8fc4:2T, 8fc5:1T, 8fc5:2T, 8fc6:1T, 8fc6:2T, 5fdu:1T, 5fdu:2T, 5fdv:1T, 5fdv:2T, 6fkr:1T, 6fkr:2T, 8fom:RT, 8fom:YT, 8fon:RT, 8fon:YT, 8g29:1T, 8g29:2T, 8g2a:1T, 8g2a:2T, 8g2b:1T, 8g2b:2T, 8g2c:1T, 8g2c:2T, 8g2d:1T, 8g2d:2T, 6gsj:B8, 6gsk:B8, 6gsk:75, 6gsl:B8, 6gsl:75, 6gzq:O1, 6gzx:O1, 6gzx:O2, 6gzz:O1, 6gzz:O2, 5hau:1R, 5hau:2R, 5hcp:1T, 5hcp:2T, 5hcq:1T, 5hcq:2T, 5hcr:1T, 5hcr:2T, 5hd1:1T, 5hd1:2T, 5ib7:B8, 5ib7:75, 5ib8:B8, 5ib8:75, 5ibb:B8, 5ibb:75, 5imq:l, 5imr:l, 5j30:RT, 5j30:YT, 5j3c:RT, 5j3c:YT, 5j4b:1T, 5j4b:2T, 5j4c:1T, 5j4c:2T, 5j4d:Q, 5j4d:VB, 5j8b:T, 7jql:1T, 7jql:2T, 7jqm:1T, 7jqm:2T, 4l47:RT, 4l47:YT, 4l71:RT, 4l71:YT, 4lel:RT, 4lel:YT, 4lfz:RT, 4lfz:YT, 7lh5:BT, 7lh5:DT, 4lnt:RT, 4lnt:YT, 4lsk:RT, 4lsk:YT, 4lt8:RT, 4lt8:YT, 7md7:1T, 7md7:2T, 6n1d:AL19, 6n1d:BL19, 6n9e:1T, 6n9e:2T, 6n9f:1T, 6n9f:2T, 5ndj:B8, 5ndj:75, 5ndk:B8, 5ndk:75, 6nd5:1T, 6nd5:2T, 6nd6:1T, 6nd6:2T, 6ndk:RT, 6ndk:YT, 6nsh:RT, 6nsh:YT, 6nta:RT, 6nta:YT, 6nuo:RT, 6nuo:YT, 6nwy:RT, 6nwy:YT, 6o3m:RT, 6o3m:YT, 6o97:1T, 6o97:2T, 6of1:1T, 6of1:2T, 6of6:RT, 6of6:YT, 6oj2:RT, 6oj2:YT, 6ope:RT, 6ope:YT, 6ord:RT, 6ord:YT, 6osi:RT, 6osi:YT, 5ot7:u, 6otr:RT, 6otr:YT, 6oxa:RT, 6oxa:YT, 6oxi:RT, 6oxi:YT, 4p6f:RT, 4p6f:YT, 4p70:RT, 4p70:YT, 6q95:P, 6qnq:B8, 6qnq:75, 6qnr:B8, 6qnr:75, 7rq8:1T, 7rq8:2T, 7rq9:1T, 7rq9:2T, 7rqa:1T, 7rqa:2T, 7rqb:1T, 7rqb:2T, 7rqc:1T, 7rqc:2T, 7rqd:1T, 7rqd:2T, 7rqe:1T, 7rqe:2T, 8t8b:1T, 8t8b:2T, 8t8c:1T, 8t8c:2T, 4tua:RT, 4tua:YT, 4tub:RT, 4tub:YT, 4tuc:RT, 4tuc:YT, 4tud:RT, 4tud:YT, 4tue:RT, 4tue:YT, 7u2h:1T, 7u2h:2T, 7u2i:1T, 7u2i:2T, 7u2j:1T, 7u2j:2T, 6ucq:1T, 6ucq:2T, 8ud6:1T, 8ud6:2T, 8ud7:1T, 8ud7:2T, 8ud8:1T, 8ud8:2T, 6uo1:1T, 6uo1:2T, 5uq7:T, 5uq8:T, 8uvr:1T, 8uvr:2T, 8uvs:1T, 8uvs:2T, 4v4i:N, 4v4j:N, 4v4x:BS, 4v4y:BS, 4v4z:BS, 4v51:BT, 4v51:DT, 4v5a:BT, 4v5a:DT, 4v5c:BT, 4v5c:DT, 4v5d:BT, 4v5d:DT, 4v5e:BT, 4v5e:DT, 4v5f:BT, 4v5f:DT, 4v5g:BT, 4v5g:DT, 4v5j:BT, 4v5j:DT, 4v5k:BT, 4v5k:DT, 4v5l:BT, 4v5m:BT, 4v5n:BT, 4v5p:BT, 4v5p:DT, 4v5q:BT, 4v5q:DT, 4v5r:BT, 4v5r:DT, 4v5s:BT, 4v5s:DT, 4v63:BT, 4v63:DT, 4v67:BT, 4v67:DT, 4v68:BT, 4v6a:BT, 4v6a:DT, 4v6f:AR, 4v6f:DR, 4v6g:BR, 4v6g:DR, 4v7j:AT, 4v7j:BT, 4v7k:AT, 4v7k:BT, 4v7l:BT, 4v7l:DT, 4v7m:BT, 4v7m:DT, 4v7p:BP, 4v7p:CP, 4v7w:BT, 4v7w:DT, 4v7x:BT, 4v7x:DT, 4v7y:BT, 4v7y:DT, 4v7z:BT, 4v7z:DT, 4v83:BP, 4v83:DP, 4v84:BP, 4v84:DP, 4v87:AR, 4v87:DR, 4v8a:AT, 4v8a:BT, 4v8b:BR, 4v8b:DR, 4v8c:AR, 4v8c:BR, 4v8d:BR, 4v8d:DR, 4v8e:AR, 4v8e:CR, 4v8f:AR, 4v8f:DR, 4v8g:BT, 4v8g:DT, 4v8h:BT, 4v8h:DT, 4v8i:BT, 4v8i:DT, 4v8j:BT, 4v8j:DT, 4v8n:BT, 4v8n:DT, 4v8o:BT, 4v8q:AT, 4v8u:BT, 4v8u:DT, 4v8x:BT, 4v8x:DT, 5v8i:1T, 5v8i:2T, 4v90:BT, 4v95:BT, 4v95:DT, 4v97:BT, 4v97:DT, 4v9a:BR, 4v9a:DR, 4v9b:BR, 4v9b:DR, 4v9h:BT, 4v9i:BT, 4v9i:DT, 4v9j:BT, 4v9j:DT, 4v9k:BT, 4v9k:DT, 4v9l:BT, 4v9l:DT, 4v9m:BT, 4v9m:DT, 4v9n:BT, 4v9n:DT, 4v9q:AP, 4v9q:CP, 4v9r:BT, 4v9r:DT, 4v9s:BT, 4v9s:DT, 5vp2:1T, 5vp2:2T, 5vpo:RT, 5vpo:YT, 5vpp:RT, 5vpp:YT, 8vtu:1T, 8vtu:2T, 8vtv:1T, 8vtv:2T, 8vtw:1T, 8vtw:2T, 8vtx:1T, 8vtx:2T, 8vty:1T, 8vty:2T, 1vvj:RT, 1vvj:YT, 1vy4:BT, 1vy4:DT, 1vy5:BT, 1vy5:DT, 1vy6:BT, 1vy6:DT, 1vy7:BT, 1vy7:DT, 4w29:BT, 4w29:DT, 4w2e:T, 4w2f:BT, 4w2f:DT, 4w2g:BT, 4w2g:DT, 4w2h:BT, 4w2h:DT, 4w2i:BT, 4w2i:DT, 4w4g:RT, 4w4g:YT, 5w4k:1T, 5w4k:2T, 5wis:1T, 5wis:2T, 5wit:1T, 5wit:2T, 4wpo:AT, 4wpo:CT, 4wq1:B8, 4wq1:75, 4wqf:AT, 4wqf:CT, 4wqr:B8, 4wqr:75, 4wqu:AT, 4wqu:CT, 4wqy:AT, 4wqy:CT, 4wr6:B8, 4wr6:75, 4wra:B8, 4wra:75, 4wro:B8, 4wsd:B8, 4wsd:75, 4wsm:B8, 4wsm:75, 4wt1:B8, 4wt1:75, 4wt8:CS, 4wt8:DS, 4wu1:B8, 4wu1:75, 4wzd:B8, 4wzd:75, 4wzo:B8, 4wzo:75, 4xej:AL19, 4xej:BL19, 6xhv:1T, 6xhv:2T, 6xhw:1T, 6xhw:2T, 6xhx:1T, 6xhx:2T, 6xhy:1T, 6xhy:2T, 6xqd:1T, 6xqd:2T, 6xqe:1T, 6xqe:2T, 4y4o:1T, 4y4o:2T, 4y4p:1T, 4y4p:2T, 4ypb:RT, 4ypb:YT, 4yzv:RT, 4yzv:YT, 4z3s:1T, 4z3s:2T, 4z8c:1T, 4z8c:2T, 4zer:1T, 4zer:2T, 5zlu:m, 4zsn:RT, 4zsn:YT
3 4xzw:A 305 42 0.2500 0.0557 0.4048 0.95
4 4rtf:D 349 35 0.1912 0.0372 0.3714 1.5
5 4twe:A 706 54 0.2206 0.0212 0.2778 1.6 4twe:B
6 8w41:A 1162 49 0.2206 0.0129 0.3061 1.8 4dbr:A, 4e7s:A, 4e7s:B, 4e7z:A, 4e7z:B, 5o2l:A, 4pfo:A, 4pfp:A, 4pfp:C, 4pjl:A, 4pjm:A, 4pjn:A, 4pk4:A, 2v26:A
7 8alz:A 258 55 0.1618 0.0426 0.2000 1.9 8yey:C, 8yey:A, 8yfi:A, 8yfj:A, 8yxw:A, 8yxw:C, 8yxx:A, 8yxx:C
8 5myj:B3 79 34 0.1912 0.1646 0.3824 2.1
9 7ufg:A 1151 61 0.2206 0.0130 0.2459 2.8
10 7ufg:B 1182 61 0.2206 0.0127 0.2459 2.8 8d8o:B
11 8hgg:C 1484 61 0.2206 0.0101 0.2459 2.8 8hgg:D, 8hgh:A, 8hgh:B
12 8a7e:C 1524 61 0.2206 0.0098 0.2459 2.8 8a7d:C, 8a7e:Q, 7y5n:C, 7y5q:B
13 4anj:A 995 49 0.2206 0.0151 0.3061 3.7 1jbz:A
14 2pmq:B 374 48 0.2206 0.0401 0.3125 5.3 4h2h:A, 4h2h:B, 4h2h:C, 4h2h:D, 4h2h:E, 4h2h:F, 4h2h:G, 4h2h:H, 2pmq:A
15 8bf8:A 302 34 0.1765 0.0397 0.3529 6.8
16 1hsk:A 303 34 0.1912 0.0429 0.3824 7.3
17 6vcf:B 455 50 0.2500 0.0374 0.3400 7.6 6vcf:A, 6vcf:C, 6vcf:D, 6vcf:F, 6vcg:A, 6vcg:B, 6vcg:C, 6vcg:D, 6vch:A, 6vch:B, 6vch:C, 6vch:D
18 8h1j:A 362 34 0.1765 0.0331 0.3529 7.7 8ex9:A, 8exa:A
19 7qm2:B 165 24 0.1324 0.0545 0.3750 8.1 7qf7:A, 7qfa:A, 7qfa:B, 7qfa:C
20 4dbq:A 744 45 0.2059 0.0188 0.3111 8.7 4pjj:A, 2vas:A
21 2vb6:A 724 45 0.2059 0.0193 0.3111 8.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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