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BioLiP
>protein
LVKPPYSYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNECFVKVPRDDKKPGKGSYWTLD
PDSYNMFENGSFLRR

The query sequence (length=95) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6ako:C 97 93 0.9789 0.9588 1.0000 1.88e-67 6akp:C, 6lbm:C, 6o3t:A, 6o3t:B
2 8vfy:O 102 94 0.7263 0.6765 0.7340 5.13e-49 8vfz:O, 8vfz:P, 8vg1:O, 8vg2:O, 7vox:A, 7vox:C, 7vox:H, 7vox:B, 1vtn:C
3 2hdc:A 97 94 0.7158 0.7010 0.7234 2.28e-48
4 7vov:A 93 92 0.6316 0.6452 0.6522 3.48e-44 7vou:C, 7vov:B
5 7cby:C 100 89 0.6632 0.6300 0.7079 5.71e-44
6 7yze:A 87 81 0.6105 0.6667 0.7160 2.30e-41 5x07:F, 5x07:C, 5x07:L, 5x07:I, 7yzf:C
7 2c6y:A 98 93 0.5474 0.5306 0.5591 5.02e-35 2c6y:B
8 8bzm:E 95 93 0.5053 0.5053 0.5161 3.72e-33 8bzm:I, 8bzm:A, 8bzm:J
9 7yza:A 122 79 0.4737 0.3689 0.5696 2.38e-28 7yz7:A, 7yzc:A, 7yzd:A
10 7yzb:A 125 98 0.4632 0.3520 0.4490 5.81e-27
11 7yzg:A 121 79 0.4105 0.3223 0.4937 1.56e-24
12 6ncm:A 91 81 0.4000 0.4176 0.4691 8.89e-24 6nce:A, 6ncm:B
13 3g73:B 95 82 0.4105 0.4105 0.4756 5.07e-22 7fj2:A, 7fj2:B, 7fj2:E, 7fj2:F, 3g73:A
14 3qrf:G 82 79 0.3895 0.4512 0.4684 6.44e-22 3qrf:F, 3qrf:H, 3qrf:I, 4wk8:F, 4wk8:G
15 2a07:J 83 84 0.3579 0.4096 0.4048 9.60e-22 2a07:K, 2a07:F, 2a07:G, 2a07:H, 2a07:I, 2as5:F, 2as5:G
16 7tdw:A 90 79 0.3684 0.3889 0.4430 1.11e-20 8sro:A, 8sro:C, 8sro:D, 8sro:B, 8srp:J, 8srp:G, 8srp:E, 8srp:D, 8srp:B, 8srp:A, 8srp:F, 8srp:C, 7tdx:A
17 6el8:A 89 79 0.3684 0.3933 0.4430 1.16e-19 6el8:D
18 3l2c:A 85 79 0.3579 0.4000 0.4304 4.22e-18
19 3co6:C 91 81 0.3474 0.3626 0.4074 5.09e-18 3co7:C, 3co7:F, 3coa:C, 3coa:F, 5dui:A, 5dui:B, 6lbi:C, 6lbi:D, 6lbi:G, 6lbi:H, 6lbi:K, 6lbi:L, 4lg0:A
20 2uzk:A 97 81 0.3474 0.3402 0.4074 1.26e-17 2uzk:C
21 7ehp:A 397 53 0.1789 0.0428 0.3208 1.3 7ehp:B
22 8dvm:A 612 82 0.1684 0.0261 0.1951 4.2 4a0p:A, 8dvl:A, 8dvn:A
23 2ww8:A 815 39 0.1474 0.0172 0.3590 4.9
24 6zu5:SD0 213 21 0.1053 0.0469 0.4762 9.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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