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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
LVDTTEMYLRTIYELEAEGVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVASDRSLQMTPTGRTLATAVMRKHRLAE
RLLTDIIGLDINKVHDEACRWEHVMSDEVERRLVKVLKDVSRSPFGNPIPGLDELGVPGTRVIDAATSMPRKVRIVQINE
IFQVETDQFTQLLDADIRVGSEVEIVDRHITLSHNGKDVELLDDLAHTIRI

The query sequence (length=211) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1c0w:B 219 214 0.9953 0.9589 0.9813 1.81e-148 1bi0:A, 1bi3:A, 1bi3:B, 1c0w:A, 1c0w:C, 1ddn:A, 1ddn:B, 1ddn:C, 1ddn:D, 2dtr:A, 1f5t:A, 1f5t:B, 1f5t:C, 1f5t:D, 1fwz:A, 1g3w:A, 1g3y:A
2 1c0w:D 175 210 0.8152 0.9829 0.8190 4.88e-114
3 1fx7:A 230 224 0.6114 0.5609 0.5759 1.18e-77 1b1b:A, 1fx7:B, 1fx7:C, 1fx7:D, 2isz:A, 2isz:B, 2isz:C, 2isz:D, 2it0:A, 2it0:B, 2it0:C, 2it0:D, 1u8r:A, 1u8r:B, 1u8r:C, 1u8r:D, 1u8r:G, 1u8r:H, 1u8r:I, 1u8r:J
4 7b20:B 228 223 0.5735 0.5307 0.5426 2.43e-75 7b1v:A, 7b1v:B, 7b1y:A, 7b1y:B, 7b1y:C, 7b1y:D, 7b1y:dd, 7b1y:aa, 7b20:A, 7b20:C, 7b20:D, 7b20:dd, 7b20:aa, 7b23:A, 7b23:B, 7b23:C, 7b23:D, 7b23:dd, 7b23:aa, 7b24:A, 7b24:B, 7b24:C, 7b24:D, 7b24:dd, 7b24:aa, 7b25:A, 7b25:B, 7b25:C, 7b25:D, 7b25:dd, 7b25:aa
5 8pw0:A 137 133 0.2085 0.3212 0.3308 1.06e-16
6 5cvi:B 215 127 0.2038 0.2000 0.3386 1.58e-15 5cvi:A
7 6o5c:A 215 211 0.2559 0.2512 0.2559 2.02e-15 6o5c:B
8 5zr6:A 214 127 0.2038 0.2009 0.3386 5.05e-15 5zr6:B
9 3hru:A 211 211 0.2512 0.2512 0.2512 3.55e-13 3hru:B
10 4o5v:A 213 127 0.1943 0.1925 0.3228 5.02e-10 4o6j:A
11 2x4h:C 131 123 0.1611 0.2595 0.2764 5.27e-06 2x4h:A, 2x4h:B, 2x4h:D
12 6ktb:B 138 109 0.1469 0.2246 0.2844 1.54e-05
13 6mh5:B 375 168 0.1896 0.1067 0.2381 1.1 6mh5:A
14 5ffz:A 140 70 0.1043 0.1571 0.3143 1.7 5fb2:A, 4lll:C, 4lll:D, 4lll:A, 4lll:B, 4lll:I, 4lll:J, 4lln:A, 4lln:B, 4lln:C, 4lln:D, 4lln:I, 4lln:J
15 1r0l:B 379 53 0.0711 0.0396 0.2830 1.9 1r0l:A, 1r0l:C, 1r0l:D
16 5e1z:B 169 45 0.0711 0.0888 0.3333 4.0 5e1x:A, 5e20:A
17 5lzt:jj 428 34 0.0569 0.0280 0.3529 5.8 4d61:i, 5hxb:X, 5hxb:A, 7nwh:jj, 6xk9:X, 6xk9:A
18 8br8:LU 157 93 0.1090 0.1465 0.2473 6.4 8brm:LU, 8bsi:LU, 8bsj:LU, 8btd:LU, 8btr:LU, 8fru:T, 7pwg:T, 7pwo:T2
19 7z8f:e 4579 110 0.1232 0.0057 0.2364 8.3 5owo:A, 8pr2:f, 8ptk:m, 8ptk:n, 7z8f:f, 7z8f:m, 7z8f:n, 7z8h:A
20 8ptk:f 4502 110 0.1232 0.0058 0.2364 8.5 8ptk:e
21 2iry:A 288 40 0.0758 0.0556 0.4000 8.5 2irx:A, 2iry:B, 4mky:B, 4mky:A, 4mky:C, 4mky:D, 3pky:A, 3pky:B, 2r9l:A, 2r9l:B
22 6s8w:C 470 40 0.0711 0.0319 0.3750 9.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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