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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
LTTFLFRNGALLDPDHPDLLQGFEILIEDGFIREVSDKPIKSSNAHVIDVKGKTIMPGLIDLHVHVVAIEFNLPRVATLP
NVLVTLRAVPIMRAMLRRGFTTVRDAGGAGYPFKQAVESGLVEGPRLFVSGRALSQTGGHADPRARSDYMPPDSPCGCCV
RVGALGRVADGVDEVRRAVREELQMGADQIKIMASGGVASPTDPVGVFGYSEDEIRAIVAEAQGRGTYVLAHAYTPAAIA
RAVRCGVRTIEHGNLIDDETARLVAEHGAYVVPTLVTYDALASEGEKYGLPPESIAKIADVHGAGLHSIEIMKRAGVKMG
FGTDLLGEAQRLQSDEFRILAEVLSPAEVIASATIVSAEVLGMQDKLGRIVPGAHADVLVVDGNPLKSVDCLLGQGEHIP
LVMKDGRLFVNELE

The query sequence (length=414) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3mkv:A 414 414 1.0000 1.0000 1.0000 0.0 3mkv:B, 3mkv:C, 3mkv:D, 3mkv:E, 3mkv:F, 3mkv:G, 3mkv:H
2 3n2c:A 408 407 0.5725 0.5809 0.5823 2.76e-163 3feq:A, 3feq:B, 3feq:C, 3feq:D, 3feq:E, 3feq:F, 3feq:G, 3feq:H, 3feq:I, 3feq:J, 3feq:K, 3feq:L, 3feq:M, 3feq:N, 3feq:O, 3feq:P, 3n2c:B, 3n2c:C, 3n2c:D, 3n2c:E, 3n2c:F, 3n2c:G, 3n2c:H, 3n2c:I, 3n2c:J, 3n2c:K, 3n2c:L, 3n2c:M, 3n2c:N, 3n2c:O, 3n2c:P
3 8ihq:A 399 413 0.3551 0.3684 0.3559 2.35e-57 8ihq:B, 8ihq:C, 8ihq:D, 8ihq:E, 8ihq:F, 8ihq:G, 8ihq:H, 8ihr:A, 8ihr:B, 8ihr:C, 8ihr:D, 8ihr:E, 8ihr:F, 8ihr:G, 8ihr:H, 8ihs:A, 8ihs:B, 8ihs:C, 8ihs:D, 8ihs:E, 8ihs:F, 8ihs:G, 8ihs:H, 8j85:A, 8j85:B, 8j85:C, 8j85:D, 8j85:E, 8j85:F, 8j85:G, 8j85:H
4 2qs8:A 406 425 0.3261 0.3325 0.3176 5.34e-56 2qs8:B
5 3mtw:A 403 392 0.3140 0.3226 0.3316 3.47e-52
6 3be7:A 398 413 0.3140 0.3266 0.3148 5.99e-52 3be7:E, 3be7:B, 3be7:D, 3be7:C, 3be7:F, 3be7:G, 3be7:H, 3dug:A, 3dug:B, 3dug:C, 3dug:D, 3dug:E, 3dug:F, 3dug:G, 3dug:H
7 4c5y:A 436 418 0.3309 0.3142 0.3278 2.09e-43 4c5y:B
8 4ub9:A 467 444 0.2705 0.2398 0.2523 4.23e-12 4ub9:B, 4ub9:C, 4ub9:D, 4ub9:E, 4ub9:F, 4ub9:G, 4wgx:A
9 4whb:A 459 413 0.2319 0.2092 0.2324 2.74e-08
10 4bjh:A 422 66 0.0628 0.0616 0.3939 2.76e-07 3d6n:A
11 3mpg:A 426 64 0.0628 0.0610 0.4062 3.15e-07 3mpg:B, 4yiw:A, 4yiw:B
12 6gdd:A 375 66 0.0628 0.0693 0.3939 3.74e-07 6gde:A, 6gdf:A, 1xrf:A, 1xrt:A, 1xrt:B
13 2vun:A 385 96 0.0725 0.0779 0.3125 1.91e-05 2vun:B, 2vun:C, 2vun:D
14 4f0r:A 436 377 0.2150 0.2041 0.2361 2.43e-05 4f0s:A
15 7bkb:G 568 73 0.0676 0.0493 0.3836 3.08e-04 7bkb:g, 7bkc:G, 7bkc:g
16 6ohb:A 435 101 0.0773 0.0736 0.3168 3.67e-04 6ohb:B, 6ohb:C, 6ohb:D, 6ohc:A, 6ohc:B, 6ohc:C, 6ohc:D
17 6ohb:A 435 19 0.0242 0.0230 0.5263 5.8 6ohb:B, 6ohb:C, 6ohb:D, 6ohc:A, 6ohc:B, 6ohc:C, 6ohc:D
18 2oof:A 403 390 0.2174 0.2233 0.2308 3.71e-04 2q09:A
19 2ftw:A 484 77 0.0580 0.0496 0.3117 4.56e-04
20 8je0:A 378 359 0.1908 0.2090 0.2201 8.76e-04 8je0:B, 8je0:C, 8je0:D
21 4cns:D 479 64 0.0507 0.0438 0.3281 0.002 4cns:A, 4cns:B, 4cns:C
22 3gri:B 423 62 0.0507 0.0496 0.3387 0.003 3gri:A
23 5t5i:A 569 74 0.0604 0.0439 0.3378 0.004 5t5i:I, 5t5m:A, 5t61:A, 5t61:G, 5t61:M, 5t61:S, 5t61:Y, 5t61:e, 5t61:k, 5t61:q
24 5t5i:A 569 78 0.0628 0.0457 0.3333 0.21 5t5i:I, 5t5m:A, 5t61:A, 5t61:G, 5t61:M, 5t61:S, 5t61:Y, 5t61:e, 5t61:k, 5t61:q
25 6sj2:B 503 192 0.1208 0.0994 0.2604 0.005 6sj0:A, 6sj0:B, 6sj1:A, 6sj1:B, 6sj2:A, 6sj3:A, 6sj3:B, 6sj4:A, 6sj4:B
26 1gkr:A 451 49 0.0386 0.0355 0.3265 0.005 1gkr:B, 1gkr:C, 1gkr:D
27 2gok:A 404 435 0.2391 0.2450 0.2276 0.010 2gok:B, 2puz:A, 2puz:B
28 4b92:A 476 417 0.2174 0.1891 0.2158 0.011 4b92:B
29 4v1x:E 474 91 0.0628 0.0549 0.2857 0.020 4v1x:A, 4v1x:B, 4v1x:C, 4v1x:D, 4v1x:F, 4v1y:A, 4v1y:B, 4v1y:C, 4v1y:D, 4v1y:E, 4v1y:F, 4v1y:G, 4v1y:H, 4v1y:I, 4v1y:J, 4v1y:K, 4v1y:L
30 4v1x:E 474 72 0.0507 0.0443 0.2917 0.94 4v1x:A, 4v1x:B, 4v1x:C, 4v1x:D, 4v1x:F, 4v1y:A, 4v1y:B, 4v1y:C, 4v1y:D, 4v1y:E, 4v1y:F, 4v1y:G, 4v1y:H, 4v1y:I, 4v1y:J, 4v1y:K, 4v1y:L
31 2ood:A 463 140 0.0966 0.0864 0.2857 0.021
32 4dzh:A 439 110 0.0845 0.0797 0.3182 0.027
33 3lnp:A 441 110 0.0870 0.0816 0.3273 0.035
34 2vr2:A 478 63 0.0459 0.0397 0.3016 0.094
35 4tqt:D 481 218 0.1449 0.1247 0.2752 0.11 4tqt:A, 4tqt:B, 4tqt:C, 4tqt:E, 4tqt:F
36 4tqt:D 481 43 0.0459 0.0395 0.4419 0.30 4tqt:A, 4tqt:B, 4tqt:C, 4tqt:E, 4tqt:F
37 3hpa:A 428 387 0.2101 0.2033 0.2248 0.12 3hpa:B
38 6k76:A 485 68 0.0435 0.0371 0.2647 0.14 6k76:B
39 1gkp:A 458 33 0.0386 0.0349 0.4848 0.29 1gkp:B, 1gkp:C, 1gkp:D, 1gkp:E, 1gkp:F, 1gkq:A, 1gkq:B, 1gkq:C, 1gkq:D
40 3icj:A 468 53 0.0411 0.0363 0.3208 0.30
41 3icj:A 468 196 0.1063 0.0940 0.2245 3.6
42 7uof:A 423 47 0.0411 0.0402 0.3617 0.54
43 1nfg:A 457 26 0.0290 0.0263 0.4615 0.57 1nfg:B, 1nfg:C, 1nfg:D
44 1k1d:A 460 42 0.0411 0.0370 0.4048 0.70 1k1d:B, 1k1d:C, 1k1d:D, 1k1d:E, 1k1d:F, 1k1d:G, 1k1d:H
45 4dyk:A 437 102 0.0725 0.0686 0.2941 0.71 4dyk:B, 4gbd:A, 4gbd:B
46 1onx:A 389 47 0.0411 0.0437 0.3617 0.75 2aqo:A, 2aqo:B, 2aqv:A, 2aqv:B, 1onw:A, 1onw:B, 1onx:B, 1po9:A, 1po9:B, 1poj:A, 1poj:B, 1pok:B, 1pok:A, 1ybq:A, 1ybq:B
47 3o0n:A 607 110 0.0821 0.0560 0.3091 0.76 1xjm:B
48 5e5c:C 479 43 0.0338 0.0292 0.3256 0.78 6ajd:A, 6ajd:B, 7e3u:A, 7e3u:B, 5e5c:A, 6klk:A, 6klk:B, 8wq9:A, 8wq9:B, 5ykd:A, 5ykd:B, 5ykd:C, 5ykd:D
49 2fty:A 532 43 0.0411 0.0320 0.3953 0.79 2fty:B, 2fty:C, 2fty:D, 2fvk:A, 2fvk:B, 2fvk:C, 2fvk:D, 2fvm:A, 2fvm:B, 2fvm:C, 2fvm:D
50 3nqb:A 587 47 0.0411 0.0290 0.3617 0.80 3nqb:B, 3t81:A, 3t81:B
51 3haz:A 983 131 0.0894 0.0376 0.2824 0.85 6bsn:A, 6bsn:B, 3haz:B, 4q71:A, 4q71:B, 4q72:A, 4q72:B, 4q73:A, 4q73:B
52 2i9u:A 419 52 0.0435 0.0430 0.3462 1.1 2i9u:B
53 8is4:A 452 67 0.0531 0.0487 0.3284 1.2 8is4:B, 8is5:A, 8is5:B, 7ww2:A, 7ww2:B
54 8dqn:C 388 46 0.0362 0.0387 0.3261 1.7 8dqn:A, 8dqn:B, 8dqn:D, 8dqn:E, 8dqn:F, 8dqn:G, 8dqn:H
55 2uz9:A 444 230 0.1111 0.1036 0.2000 1.8 4aql:A, 3e0l:A, 3e0l:B
56 1knw:A 421 132 0.0845 0.0831 0.2652 1.8 1ko0:A
57 1xje:A 627 108 0.0797 0.0526 0.3056 2.8 3o0n:B, 3o0o:A, 3o0o:B, 3o0q:A, 3o0q:B, 1xje:B, 1xjf:A, 1xjf:B, 1xjg:A, 1xjg:B, 1xjj:A, 1xjj:B, 1xjk:A, 1xjk:B, 1xjm:A, 1xjn:A, 1xjn:B, 1xjn:C, 1xjn:D
58 3hm7:B 437 52 0.0386 0.0366 0.3077 3.5 3hm7:A, 3hm7:C, 3hm7:D, 3hm7:E, 3hm7:F
59 1m7j:A 474 24 0.0314 0.0274 0.5417 4.2 1rjp:A, 1rjq:A, 1rjr:A, 1rk5:A, 1rk6:A, 1v4y:A, 1v51:A
60 1p1m:A 404 39 0.0338 0.0347 0.3590 5.0 2plm:A
61 2g3f:A 414 21 0.0242 0.0242 0.4762 5.4 2bb0:A, 2bb0:B, 2g3f:B
62 3gip:A 474 20 0.0242 0.0211 0.5000 6.1 3gip:B, 3giq:A, 3giq:B
63 3sfw:A 461 27 0.0266 0.0239 0.4074 7.0 3sfw:B
64 3dc8:A 483 49 0.0411 0.0352 0.3469 7.5 3dc8:B
65 7e5a:B 471 122 0.0700 0.0616 0.2377 8.1 7e5a:A
66 8sr8:A 1353 38 0.0386 0.0118 0.4211 9.0 8sr8:B, 8sr8:C, 8sr8:D, 8sr9:A, 8sr9:B, 8sr9:C, 8sr9:D, 8sra:A, 8sra:B, 8sra:C, 8sra:D, 8srb:A, 8srb:B, 8srb:C, 8srb:D
67 7cf6:A 384 372 0.2005 0.2161 0.2231 9.2 7cdh:X, 7cf6:B, 7cf6:C, 7cf6:D
68 8sre:A 1377 38 0.0386 0.0116 0.4211 9.8 8sr7:A, 8sr7:B, 8sr7:C, 8sr7:D, 8src:A, 8src:B, 8src:C, 8src:D, 8srd:A, 8srd:B, 8srd:C, 8srd:D, 8sre:B, 8sre:D, 8sre:C, 8srf:A, 8srf:B, 8srf:C, 8srf:D, 8srg:A, 8srg:B, 8srg:C, 8srg:D, 8srh:A, 8srh:B, 8srh:C, 8srh:D, 8sri:A, 8sri:B, 8sri:C, 8sri:D, 8srj:A, 8srj:B, 8srj:D, 8srj:C, 8srk:A, 8srk:B, 8srk:C, 8srk:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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