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BioLiP
>protein
LTSVEPCVICQTRPKNGCIVHGRTGHLMACYTCAKKLKKRNKPCPVCREPIQMIVLTYFS

The query sequence (length=60) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7ahz:GGG 60 60 1.0000 1.0000 1.0000 7.70e-40 7ahy:AAA, 7ahy:BBB, 7ahz:AAA, 7ahz:DDD, 7ahz:JJJ
2 6sqr:A 69 58 0.8667 0.7536 0.8966 1.24e-35 7ai0:AAA, 7ai0:DDD, 7ai1:AAA, 7ai1:DDD, 2hdp:A, 2hdp:B, 5mnj:C, 5mnj:G, 6sqo:A, 6sqo:D, 6sqp:A, 6sqp:B, 6sqp:C, 6sqp:D, 6sqr:D, 6sqr:G, 6sqr:J, 6sqs:A, 6sqs:D, 2vje:A, 2vje:C, 2vjf:A, 2vjf:C
3 7ah2:AAA 58 57 0.8333 0.8621 0.8772 7.55e-33 7ah2:BBB
4 7mla:A 67 57 0.4167 0.3731 0.4386 4.13e-18 5mnj:D, 5mnj:H, 2vje:B, 2vje:D, 2vjf:B, 2vjf:D
5 3eb5:A 65 46 0.3167 0.2923 0.4130 0.003 3eb6:A
6 1chc:A 68 63 0.3167 0.2794 0.3016 0.025
7 6k2k:A 57 54 0.3000 0.3158 0.3333 0.062 6m2c:E, 6m2c:F, 6m2c:G, 6m2c:H, 6m2d:A, 6m2d:B, 6m2d:C, 6m2d:D, 6m2d:E, 6m2d:F
8 3t6p:A 330 34 0.2500 0.0455 0.4412 0.099 3d9t:A, 3d9t:B, 3d9u:A, 8dsf:A, 8dsf:B, 8dsf:C, 8dsf:D, 8dso:D, 4eb9:A, 4eb9:B, 4eb9:C, 4eb9:D, 6exw:A, 6exw:C, 6hpr:A, 4hy4:A, 4hy4:B, 4hy5:A, 4hy5:B, 4lge:A, 4lge:B, 4lgu:A, 4lgu:B, 5m6n:A, 5m6n:B, 4mti:A, 4mti:B, 3mup:A, 3mup:B, 3mup:C, 3mup:D, 4mu7:A, 4mu7:B, 3oz1:A, 3oz1:B, 3oz1:C, 3oz1:D, 1qbh:A, 7trm:A, 3uw4:A, 6w74:A, 6w7o:C, 6w7o:D, 6w8i:F, 6w8i:D, 6w8i:E
9 2jrp:A 81 41 0.2500 0.1852 0.3659 0.11
10 4auq:B 57 60 0.3500 0.3684 0.3500 0.38 4auq:E
11 5zi6:A 55 35 0.2000 0.2182 0.3429 0.51 5zi6:B, 5zi6:C, 5zi6:D, 5zi6:E, 5zi6:F, 5zi6:G, 5zi6:H
12 2yho:E 70 35 0.2000 0.1714 0.3429 0.55 2yhn:A, 2yhn:B, 2yho:A, 2yho:C, 2yho:G
13 1yaa:A 412 42 0.2167 0.0316 0.3095 0.95 1yaa:B, 1yaa:C, 1yaa:D
14 4axd:A 433 9 0.1167 0.0162 0.7778 1.1 4aqk:A, 4axe:A, 6fjk:A, 6fl3:A, 6fl8:A, 2xal:A, 2xal:B, 2xam:A, 2xam:B, 2xan:B, 2xao:B, 2xar:A, 2xar:B
15 6f98:A 78 27 0.1667 0.1282 0.3704 1.3
16 2ecg:A 75 47 0.3000 0.2400 0.3830 1.7 4ic2:A, 4ic2:B, 4ic3:A, 4ic3:B, 5o6t:A, 5o6t:B, 8w59:A, 8w59:B, 8w5a:A, 8w5a:B
17 3vk6:A 96 26 0.2167 0.1354 0.5000 1.8 2mq1:A
18 2ecn:A 70 65 0.3167 0.2714 0.2923 1.9 5xek:A
19 6akd:A 488 22 0.1667 0.0205 0.4545 2.9
20 6fl3:B 420 9 0.1000 0.0143 0.6667 3.4 4axc:A, 4axf:A, 6fjk:B, 6fl8:B, 6gfg:B, 6gfg:A, 6gfh:A, 6gfh:B, 4lv7:B, 3udt:A, 3udt:B, 3udz:A, 3udz:B, 2xan:A, 2xao:A
21 5g1n:E 307 34 0.2000 0.0391 0.3529 4.2 5g1n:A, 5g1n:B, 5g1n:C, 5g1n:D, 5g1n:F, 5g1p:A, 5g1p:B, 5g1p:C, 5g1p:D, 5g1p:E, 5g1p:F
22 6o7i:A 741 47 0.2000 0.0162 0.2553 4.2
23 6muu:A 780 47 0.2000 0.0154 0.2553 4.2 6iqw:A, 6mur:A, 6mus:A, 6mut:A, 6o7e:A, 6o7h:A
24 8ebw:H 532 31 0.2000 0.0226 0.3871 4.6 8ebs:H, 8ebt:H, 8ebv:H, 8ebx:H
25 3lrq:D 84 27 0.1500 0.1071 0.3333 5.6 3lrq:A, 3lrq:B, 3lrq:C
26 6skz:A 2638 27 0.1833 0.0042 0.4074 5.8 6sl0:A, 6sl0:B
27 8e2q:B 160 34 0.2000 0.0750 0.3529 6.6 8e2p:A, 8e2p:B, 8e2p:C, 8e2p:D, 8e2q:A, 8e2q:C, 8e2q:D, 8e2r:A, 8e2r:B, 8e2s:A, 8e2s:B, 8e2s:C, 8e2s:D, 8e2s:E, 8e2s:F, 8e2s:G, 8e2s:H, 6vpc:F
28 3p1v:A 406 28 0.1500 0.0222 0.3214 7.7 3p1v:B
29 7t92:C 317 42 0.1833 0.0347 0.2619 8.3
30 4df9:C 405 28 0.1500 0.0222 0.3214 8.4 4df9:A, 4df9:B, 4df9:D, 4df9:E, 4df9:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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