Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
LTRVLGIQLGNTGTDYCVMNEDGDWEIVAREEGVFGKISCVFTLEESRRALREEIAPRVIERVRRVNPDLAVVGTIVDEL
GLILGPMIHEKTGVPTLAVYGDPWGAPDGDAVGAPYCVAEEYPNCVHVDVGAMAVVTPIRDGRPDFGDAVVSVGTFPLDL
AARELLGKEYDEGGKKAAEGEVDENFRRELRSVDVDGKPVFGRVRGSLAPVPPEQERVLRDHIRDAGAPAEDVLRTLVEL
VAETIVINAAQYDMDLLVLSGGGVKNELLKRRVSELWEGDVSIFAGEELEARGLCLLGLRYLEGEPVPALPCEGGTGRGG
KT

The query sequence (length=322) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4bga:C 322 322 1.0000 1.0000 1.0000 0.0 4bg8:A, 4bg8:B, 4bg9:A, 4bga:A, 4bga:D, 4bga:B, 4bgb:A, 4bgb:B
2 4mo5:A 345 187 0.1335 0.1246 0.2299 0.13
3 5sy1:A 582 57 0.0590 0.0326 0.3333 0.95 5sy1:B
4 4zfv:A 436 153 0.1149 0.0849 0.2418 1.5 5bsb:A, 5bvc:A, 5tkr:A, 4yh5:A, 4yh5:B, 4zfv:B, 4zlu:A, 4zlu:B
5 7aor:ar 255 80 0.0683 0.0863 0.2750 2.0
6 4m1m:A 1188 55 0.0466 0.0126 0.2727 2.3 8avy:A, 6fn1:A, 3g60:A, 3g60:B, 3g61:A, 3g61:B, 5koy:A, 5koy:B, 4m1m:B, 4m2s:A, 4m2s:B, 4m2t:A, 4m2t:B, 7otg:A, 8pee:A, 6q81:A, 4q9i:A, 4q9j:A, 4q9k:A, 4q9l:A, 6qee:A, 6ujn:A, 6ujp:A, 6ujr:A, 6ujs:A, 6ujt:A, 6ujw:A, 4xwk:A, 7zk4:A, 7zk5:A, 7zk6:A, 7zk7:A, 7zk8:A, 7zk9:A, 7zka:A, 7zkb:A
7 8cuy:A 1016 32 0.0497 0.0157 0.5000 3.2
8 3h3n:X 501 99 0.0807 0.0519 0.2626 5.0 3d7e:O, 3d7e:X, 3flc:O, 3flc:X, 3h3n:O, 3h3o:O, 3h3o:X, 3h3o:B, 3h3o:C, 3h45:X, 3h45:O, 3h45:C, 3h45:D, 3h46:X, 3h46:O, 1xup:O, 1xup:X
9 7tby:A 1788 19 0.0280 0.0050 0.4737 5.5 7tc0:A
10 7roq:A 1831 19 0.0280 0.0049 0.4737 5.5
11 7tbw:A 1928 19 0.0280 0.0047 0.4737 5.5
12 1mzv:A 216 62 0.0559 0.0833 0.2903 6.0
13 7ane:ar 252 75 0.0652 0.0833 0.2800 7.2

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218