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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
LTRLILVLGDQLSDDLPALRAADPAADLVVMAEVMEEGTYVPHHPQKIALILAAMRKFARRLQERGFRVAYSRLDDPDTG
PSIGAELLRRAAETGAREAVATRPGDWRLIEALEAMPLPVRFLPDDRFLCPADEFARWTEGLRMEWFYREMRRRTGLLME
GDEPAGGKWNFDTENRKPAAPDLLRPRPLRFEPDAEVRAVLDLVEARFPRHFGRLRPFHWATDRAEALRALDHFIRESLP
RFGDEQDAMLADDPFLSHALLSSSMNLGLLGPMEVCRRAETEWREGRAPLNAVEGFIRQILGWREYVRGIWTLSGPDYIR
SNGLGHSAALPPLYWGKPTRMACLSAAVAQTRDLAYAHHIQRLMVTGNFALLAGVDPAEVHEWYLSVYIDALEWVEAPNT
IGMSQFADHGLLGSKPYVSSGAYIDRMSDYCRGCAYAVKDRTGPRACPFNLLYWHFLNRHRARFERNPRMVQMYRTWDRM
EETHRARVLTEAEAFLGRLHAGEPV

The query sequence (length=505) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3zxs:A 508 508 1.0000 0.9941 0.9941 0.0 3zxs:B, 3zxs:C
2 6dd6:A 512 507 0.5287 0.5215 0.5266 0.0 4dja:A, 5kcm:A, 5kcm:B, 5lfa:A
3 8a1h:A 516 511 0.4277 0.4186 0.4227 1.55e-123 7ykn:A
4 8ijy:A 501 497 0.4000 0.4032 0.4064 1.81e-123
5 7bc4:B 2054 109 0.0614 0.0151 0.2844 0.21
6 8bmw:H 275 35 0.0277 0.0509 0.4000 0.82 8bmw:I
7 5h1y:B 245 89 0.0455 0.0939 0.2584 1.6 5h1y:A
8 6kii:A 485 232 0.0990 0.1031 0.2155 1.7
9 1bwk:A 399 66 0.0436 0.0551 0.3333 3.4 7bn7:A, 7bn7:B, 7bn7:C, 7bn7:D, 1bwl:A, 4gbu:A, 4ge8:A, 4gwe:A, 4gxm:A, 4h4i:A, 4h6k:A, 1k02:A, 1k03:A, 4k7v:A, 4k7y:A, 4k8e:A, 4k8h:A, 1oya:A, 1oyb:A, 1oyc:A, 3rnd:A, 3tx9:A, 3txz:A, 4yil:A, 4ync:A
10 1mvm:A 549 101 0.0554 0.0510 0.2772 3.4 1z1c:A
11 4rnu:C 385 66 0.0436 0.0571 0.3333 4.0 4rnu:A, 4rnu:B, 4rnu:D, 4rnv:A, 4rnv:B, 4rnv:C, 4rnv:D, 4rnw:A, 4rnw:B
12 4rnx:A 390 66 0.0436 0.0564 0.3333 4.1 4rnx:B
13 7poa:A 398 82 0.0455 0.0578 0.2805 5.2 7poa:B, 7pob:A, 7pob:D, 7pob:B, 7pob:C, 7poc:A, 7poc:D, 7poc:B, 7poc:C
14 4iof:A 932 48 0.0337 0.0182 0.3542 6.2
15 3cdz:A 630 42 0.0277 0.0222 0.3333 8.7 3j2q:A
16 2r7e:A 693 41 0.0277 0.0202 0.3415 8.7
17 7kwo:A 1200 42 0.0277 0.0117 0.3333 9.4
18 6mf2:A 1222 42 0.0277 0.0115 0.3333 9.4 4bdv:A, 4bdv:B, 3cdz:B, 3j2q:B, 5k8d:A, 5k8d:B, 2r7e:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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