Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
LTPAEVLFDPAVLPACDHYAGSEKLMLKSLALQQQLGPVFDITLDCEDGAQVGREAQHAELVASLLGSEHDRFGRVGVRI
HDFDHAHWRDDVRLILRAAKRAPAYITLPKIRHVHDAAEMVAFIEATRRELGIAQPVPVQLLVETHGALTRVFDLAALPG
VEALSFGLMDFVSAHDGAIPDTAMRSPGQFDHPLVRRAKLEISAACHAYGKVPSHNVSTEVRDMSVVANDAARARNEFGY
TRMWSIHPAQIEAIVAAFAPRDEEITTATEILLAAQSAQWGPTRYHDTLHDRASYRYYWSVLRRAQATGRAVPQDAAPLF

The query sequence (length=320) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3r4i:A 321 320 1.0000 0.9969 1.0000 0.0 3r4i:B, 3r4i:C, 3r4i:D, 3r4i:E, 3r4i:F
2 4l9y:C 316 281 0.2500 0.2532 0.2847 9.83e-17 4l9y:A, 4l9y:B, 4l9y:D, 4l9y:E, 4l9y:F, 4l9z:A, 4l9z:B, 4l9z:C, 4l9z:D, 4l9z:E, 4l9z:F
3 5ugr:A 323 255 0.2156 0.2136 0.2706 2.91e-08
4 4l80:C 347 257 0.1719 0.1585 0.2140 0.002 6kkh:C, 6kkh:F, 6kkh:I, 6kkh:L, 4l80:A, 4l80:B, 4l80:D, 4l80:F, 4l80:E
5 5vxc:A 301 281 0.2000 0.2126 0.2278 0.007 5vxo:A, 5vxo:B, 5vxo:C
6 6aq4:B 268 266 0.2125 0.2537 0.2556 0.007 6aq4:A, 6aq4:C, 6arb:A, 6arb:B, 6arb:C, 6as5:A, 6as5:C, 6as5:B, 6chu:A, 6cj3:A, 6cj4:A, 1u5v:A, 1z6k:A
7 3qup:A 241 90 0.0813 0.1079 0.2889 0.047 4feq:A, 4ff8:A
8 7zrn:A 301 111 0.0969 0.1030 0.2793 4.7 7zrn:B
9 8odp:A 505 75 0.0719 0.0455 0.3067 5.4 8btt:A, 8odo:A, 8odo:C, 8odo:E, 8odo:G, 8odp:C, 8odp:E, 8odp:G, 7p3b:A, 7p3b:B

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218