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BioLiP
>protein
LTIHVDQDKCQGHARCKALAPELFDLDDYGNAHEKGDGVVPADLIDKAWLAKSNCPENAIDITED

The query sequence (length=65) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4ov1:A 66 65 1.0000 0.9848 1.0000 7.32e-44 4id8:A
2 4dhv:B 66 62 0.3692 0.3636 0.3871 1.39e-08 4dhv:A, 3pni:A, 3pni:B, 1siz:A, 1siz:C, 1sj1:A, 1sj1:B, 2z8q:A, 2z8q:B
3 8amq:A 464 64 0.3692 0.0517 0.3750 2.66e-07 8amo:A, 8ckn:A
4 8amp:A 65 62 0.3385 0.3385 0.3548 3.48e-04
5 1rof:A 60 64 0.3231 0.3500 0.3281 0.001 1vjw:A
6 1dwl:A 59 59 0.3077 0.3390 0.3390 0.029
7 1yxh:A 119 49 0.2154 0.1176 0.2857 0.38
8 1iqz:A 81 66 0.3231 0.2593 0.3182 0.95 1ir0:A, 1wtf:A, 1wtf:B, 1wtf:C, 1wtf:D, 7yl8:A
9 1eje:A 192 39 0.1692 0.0573 0.2821 1.4
10 2b96:A 123 53 0.2308 0.1220 0.2830 2.1 2bax:A, 2bch:A, 2bd1:A, 2bd1:B, 1bp2:A, 1bpq:A, 2bpp:A, 3bp2:A, 4bp2:A, 1c74:A, 1ceh:A, 1fdk:A, 1g4i:A, 1gh4:A, 1irb:A, 1kvw:A, 1kvx:A, 1kvy:A, 1mks:A, 1mkt:A, 1mku:A, 1mkv:A, 1o2e:A, 1o3w:A, 1une:A, 1vkq:A, 1vl9:A, 2zp4:A
11 2wq5:A 119 50 0.2000 0.1092 0.2600 2.3 1poa:A, 1pob:A, 1pob:B
12 1jwq:A 179 37 0.2154 0.0782 0.3784 2.8
13 2ivf:B 337 17 0.1231 0.0237 0.4706 3.3
14 1dax:A 64 25 0.1538 0.1562 0.4000 3.5 1dfd:A, 1fxr:A, 1fxr:B
15 7nhk:0 495 14 0.1385 0.0182 0.6429 3.8
16 3gci:A 119 49 0.2154 0.1176 0.2857 4.5 3jq5:A, 3jql:A, 3jti:A, 1ln8:A, 1mf4:A, 3nju:A, 3osh:A, 1oxr:A, 1psh:A, 1psh:B, 1psh:C, 3q4y:A, 1sz8:A, 1t37:A, 1td7:A, 1yxl:A, 1zm6:A
17 2rd4:B 119 48 0.2000 0.1092 0.2708 5.9 1s6b:B
18 4f8b:B 145 45 0.1846 0.0828 0.2667 6.4 4f8b:A, 4f8b:C, 4f8b:D, 4f8b:E, 4fgc:A, 4fgc:B, 4fgc:C, 4fgc:D, 4fgc:E, 5udg:A, 5udg:D, 5udg:E
19 8bot:A 3528 23 0.1538 0.0028 0.4348 7.2
20 7nfc:A 3562 23 0.1538 0.0028 0.4348 7.2 8bh3:S, 8bh3:A, 8bhv:A, 8bhv:F, 8bhy:A, 8bhy:S, 8bot:F, 8bot:S, 7nfc:F
21 7k1j:A 3584 23 0.1538 0.0028 0.4348 7.2 7k19:A
22 7nfe:A 3585 23 0.1538 0.0028 0.4348 7.2
23 7k1k:A 3604 23 0.1538 0.0028 0.4348 7.2 7k1b:A
24 7k1n:A 3634 23 0.1538 0.0028 0.4348 7.2 7z88:A
25 5y3r:C 3636 23 0.1538 0.0028 0.4348 7.2
26 7k17:B 3645 23 0.1538 0.0027 0.4348 7.2 7k17:A
27 7otm:A 3656 23 0.1538 0.0027 0.4348 7.2 7otp:A, 7otv:A, 7otw:A, 7oty:A
28 8ez9:L 3662 23 0.1538 0.0027 0.4348 7.2 8ez9:C
29 7k0y:A 3669 23 0.1538 0.0027 0.4348 7.2
30 7z87:A 3689 23 0.1538 0.0027 0.4348 7.2
31 6zha:A 3707 23 0.1538 0.0027 0.4348 7.2 6zh8:A
32 8eza:L 3720 23 0.1538 0.0027 0.4348 7.2 8eza:C, 7lt3:C, 7lt3:L
33 8ezb:C 3724 23 0.1538 0.0027 0.4348 7.2 8ezb:L
34 6zhe:F 3731 23 0.1538 0.0027 0.4348 7.2
35 7sud:A 3740 23 0.1538 0.0027 0.4348 7.2
36 6zhe:A 3768 23 0.1538 0.0027 0.4348 7.2
37 7su3:A 3802 23 0.1538 0.0026 0.4348 7.2
38 7sgl:A 3852 23 0.1538 0.0026 0.4348 7.2
39 1k8c:B 319 19 0.1846 0.0376 0.6316 8.4 1k8c:A, 1k8c:C, 1k8c:D, 1mi3:A, 1mi3:B, 1mi3:C, 1mi3:D, 1r38:A, 1r38:B, 1r38:C, 1r38:D, 1sm9:A, 1sm9:B, 1sm9:C, 1sm9:D, 1ye4:A, 1ye4:B, 1ye4:C, 1ye4:D, 1ye6:A, 1ye6:B, 1ye6:C, 1ye6:D, 1z9a:A, 1z9a:B, 1z9a:C, 1z9a:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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