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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
LTIEDIHDVEELRAVDEFRNLLVSENLLPPTLDDYHIMLRFLKARKFDIGKTKLMWSNMIKWRKDFGTDTIFEDFEFEEF
DEVLKYYPHGYHGVDKEGRPVYIERLGLVDPAKLMQVTTVERFIRYHVREFEKTVNIKLPACCIAAKRHIDSSTTILDVQ
GVGFKNFSKPARDLIIQLQKIDNDNYPETLHRMFIINGGSGFKLVWATVKQFLDPKTVTKIHVIGNKYQNKLLEIIDASQ
LPDFLGGTCTCADRGGCMRSDKGPWNDPEILKMLQSGGPLCRHNSALNS

The query sequence (length=289) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7y10:A 291 289 1.0000 0.9931 1.0000 0.0 7y10:B, 7y11:A, 7y11:B
2 6f0e:A 300 265 0.3702 0.3567 0.4038 9.79e-64 7zg9:A, 7zg9:B, 7zga:A, 7zgb:A, 7zgc:A, 7zgd:A
3 3b7n:A 307 269 0.3391 0.3192 0.3643 3.70e-52 3b7z:A, 6sld:A
4 4tlg:A 396 250 0.2734 0.1995 0.3160 5.53e-28 4tlg:B
5 1olm:E 397 245 0.2595 0.1889 0.3061 5.05e-27 1olm:A, 1olm:C, 4omj:A, 4omj:B, 4omk:A, 4omk:B
6 1oiz:A 265 223 0.2111 0.2302 0.2735 5.79e-11 5mue:A, 5mug:A, 1oip:A, 1oiz:B, 1r5l:A, 3w67:A, 3w67:B, 3w67:C, 3w67:D, 3w68:A, 3w68:B, 3w68:D, 6zpd:A
7 7wvt:A 364 219 0.2007 0.1593 0.2648 2.74e-10 7wwd:A, 7wwg:A
8 3w68:C 252 221 0.1972 0.2262 0.2579 1.65e-09
9 4ciz:A 284 218 0.1730 0.1761 0.2294 0.010 4cj6:A, 3hx3:A, 3hy5:A
10 6w32:B 288 224 0.1626 0.1632 0.2098 0.046 6w32:A, 6w32:C
11 1zh7:A 243 86 0.0727 0.0864 0.2442 2.9 1zh7:B
12 6kxk:D 553 93 0.0761 0.0398 0.2366 5.2 6kxk:F, 6kxu:A, 6kxu:B, 6kxu:C, 6kxu:D, 6kxu:E, 6kxu:F, 6kxu:G, 6kxu:H
13 5ck5:A 221 67 0.0657 0.0860 0.2836 7.4 5ck4:A, 5ck4:B, 5ck5:B, 5ck5:C, 5ck5:D
14 2a4e:A 208 51 0.0554 0.0769 0.3137 7.6
15 1s3n:A 165 32 0.0381 0.0667 0.3438 8.3 1s3n:B
16 7e2i:D 907 66 0.0657 0.0209 0.2879 8.4 7e2g:D, 7e2h:E

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218