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BioLiP
>protein
LTCVTDKSFGGVITEECAAGQKICFKNWKKMGPKLYDVKRGCTATCPKADDNGCVKCCNTDKCNK

The query sequence (length=65) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7c28:A 65 65 1.0000 1.0000 1.0000 1.90e-42 7c28:B
2 5mg9:A 65 65 0.5385 0.5385 0.5385 4.97e-20
3 2bhi:A 60 53 0.3385 0.3667 0.4151 1.71e-07 2bhi:B, 1h0j:A, 1h0j:B, 1h0j:C, 1xt3:A
4 1v6p:A 62 65 0.3231 0.3387 0.3231 0.002 1v6p:B
5 8vy8:B 75 51 0.3077 0.2667 0.3922 0.009 1abt:A, 2btx:A, 1bxp:A, 1haa:A, 1haj:A, 5hbv:A, 1hc9:A, 1hc9:B, 1hoy:A, 1idg:A, 1idh:A, 1jbd:A, 1kc4:A, 1kl8:A, 1l4w:A, 1ljz:A, 2qc1:A, 1rgj:A, 6uwz:G, 8vy8:A, 8vy8:E, 8vy8:G
6 7vwa:A 138 35 0.2000 0.0942 0.3714 0.060
7 1lxg:A 71 27 0.2000 0.1831 0.4815 0.22 1lxh:A, 7pc0:K, 6zfm:A, 6zfm:B, 6zfm:D, 6zfm:E
8 9avv:G 62 65 0.3077 0.3226 0.3077 1.4 9avv:F, 9awk:F, 9awk:G
9 5ebx:A 62 63 0.2615 0.2742 0.2698 2.8 6ebx:B
10 3edy:A 544 19 0.1231 0.0147 0.4211 3.2 3ee6:A, 3ee6:B
11 6ncz:C 589 44 0.2154 0.0238 0.3182 4.1 6ncz:A, 6ncz:B, 6ncz:D, 6ncz:E, 6ncz:F
12 1zrt:D 248 35 0.2154 0.0565 0.4000 4.2 6xi0:D, 6xi0:Q, 6xkt:D, 6xkt:Q, 6xku:D, 6xku:Q, 6xkv:D, 6xkv:Q, 6xkw:D, 6xkw:Q, 6xkx:D, 6xkx:Q, 6xkz:D, 6xkz:Q, 1zrt:Q

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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