Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
LTCFNCGKPGHTARMCRQPRQEGCWNCGSKEHRFAQCPK

The query sequence (length=39) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2a51:A 39 39 1.0000 1.0000 1.0000 2.77e-24
2 2ec7:A 49 39 0.5641 0.4490 0.5641 2.77e-12
3 6rwg:A 157 37 0.5128 0.1274 0.5405 2.20e-10 1a1t:A, 1aaf:A, 1bj6:A, 2buo:A, 1esk:A, 2exf:A, 1f6u:A, 5i1r:A, 2jzw:A, 2l4l:A, 2m3z:A, 1mfs:A, 1q3y:A, 1q3z:A, 7r7p:I, 7r7p:L
4 2bl6:A 37 36 0.4359 0.4595 0.4722 9.32e-05
5 2bl6:A 37 16 0.2051 0.2162 0.5000 2.2
6 7s7b:F 352 18 0.2821 0.0312 0.6111 0.002 7s7b:B, 7s7c:B
7 7s7b:F 352 34 0.2821 0.0312 0.3235 0.12 7s7b:B, 7s7c:B
8 2li8:A 63 37 0.4103 0.2540 0.4324 0.018
9 2cqf:A 63 37 0.4103 0.2540 0.4324 0.019
10 5udz:A 139 37 0.4103 0.1151 0.4324 0.023 8ops:B, 8opt:B, 8ost:B, 3trz:A, 3trz:B, 3trz:C, 3trz:D, 3trz:E, 3trz:F, 3ts0:A, 3ts0:B, 3ts2:A, 3ts2:B, 5udz:B
11 2ysa:A 55 16 0.2564 0.1818 0.6250 0.26
12 6lvb:A 762 31 0.3077 0.0157 0.3871 0.31 6lvb:C, 6lvb:E, 6lvb:G, 6lvc:A, 6lvc:C, 6lvv:A, 6lvv:C, 6lvv:E, 6lvv:G, 6lvv:I, 6lvv:K, 6lvv:M, 6lvv:O, 7w8j:A, 7w8j:C, 7w8j:E, 7w8j:G
13 7c4c:A 332 37 0.3846 0.0452 0.4054 0.51 7c42:A, 7c43:A, 7c45:A, 7c47:A, 7c4b:A
14 7c4c:A 332 39 0.4359 0.0512 0.4359 6.5 7c42:A, 7c43:A, 7c45:A, 7c47:A, 7c4b:A
15 2ihx:A 50 42 0.3846 0.3000 0.3571 0.56
16 6bk8:O 229 20 0.2308 0.0393 0.4500 1.3
17 5ijl:A 943 36 0.2821 0.0117 0.3056 1.5
18 8ppt:B 1191 36 0.2821 0.0092 0.3056 1.5 8ppu:B, 8ppv:B, 6t8h:B
19 6exn:c 204 20 0.2308 0.0441 0.4500 2.1
20 3nyb:B 64 22 0.2051 0.1250 0.3636 2.9
21 3zt9:A 192 19 0.2051 0.0417 0.4211 5.0
22 2pzi:A 654 28 0.3077 0.0183 0.4286 5.6 2pzi:B, 7q52:AAA, 4y0x:A, 4y12:A
23 7u58:A 651 16 0.1795 0.0108 0.4375 5.7 7u58:B
24 6jg1:A 606 22 0.2051 0.0132 0.3636 6.8 1ex1:A, 1ieq:A, 1iev:A, 1iew:A, 1iex:A, 1j8v:A, 6jg2:A, 6jg6:A, 6jg7:A, 6jga:A, 6jgb:A, 6jgc:A, 6jgd:A, 6jge:A, 6jgg:A, 6jgk:A, 6jgl:A, 6jgn:A, 6jgo:A, 6jgp:A, 6jgq:A, 6jgr:A, 6jgs:A, 6jgt:A, 6k6v:A, 6kuf:A, 6l1j:A, 6lbb:A, 6lbv:A, 6lc5:A, 1lq2:A, 6md6:A, 6mi1:A, 3wlh:A, 3wlj:A, 3wlk:X, 3wll:A, 3wlo:A, 3wlp:A, 1x38:A, 1x39:A
25 7zs0:A 278 21 0.2308 0.0324 0.4286 7.9 7zs1:A, 7zs2:A
26 4f3x:A 476 25 0.2308 0.0189 0.3600 8.2 4f3x:B, 4f3x:C, 4f3x:D

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218