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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
LTCDQLPKAAINPIQEFIDSNPLEFEYVLTETFECTTRIYVQPARWSTTKAPTALDIKGTQIMAYDFVGGPENSAHLNEC
HTGDKQVWYFQYTNLLTDNGSSYCAYRCNGTEIIEYKCASNNNGTDPLQHQAMEVAKTVPNGDKIHYAKSNCPETHGCFA
FY

The query sequence (length=162) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6kfa:A 162 162 1.0000 1.0000 1.0000 2.53e-123 6kfb:A, 6kfd:A
2 7yax:A 166 162 0.7284 0.7108 0.7284 2.46e-88 7yax:B, 7yax:C, 7yax:D, 7ycb:A, 7ycb:B, 7ycb:C, 7ycb:D, 7ycd:A, 7ycd:B, 7ycd:C, 7ycd:D, 7ycf:A, 7ycf:B, 7ycf:C, 7ycf:D, 7yct:A, 7yct:B, 7yct:C, 7yct:D
3 7bpo:A 165 163 0.5000 0.4909 0.4969 3.94e-52 7bpo:B, 7br1:A, 7br1:B
4 2q46:A 253 49 0.0864 0.0553 0.2857 1.9 2q46:B, 2q4b:A, 2q4b:B, 1xq6:A, 1xq6:B, 1ybm:A, 1ybm:B
5 7aat:A 401 35 0.0802 0.0324 0.3714 2.5 7aat:B, 8aat:A, 8aat:B, 9aat:A, 9aat:B, 1aka:A, 1aka:B, 1akb:A, 1akc:A, 1ama:A, 1ivr:A, 1map:A, 1maq:A, 1oxo:A, 1oxo:B, 1oxp:A, 1tar:A, 1tar:B, 1tas:A, 1tas:B, 1tat:A, 1tat:B
6 7q4i:B 281 30 0.0864 0.0498 0.4667 2.8 7q4i:A
7 8ioo:A 327 27 0.0679 0.0336 0.4074 6.9 8ioo:B, 8ioo:C
8 2chq:A 313 24 0.0617 0.0319 0.4167 8.5 2chg:A, 2chg:B, 2chg:C, 2chg:D, 2chq:B, 2chq:C
9 7su3:A 3802 25 0.0679 0.0029 0.4400 9.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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