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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
LTAAGAFSSDERAAVYRAIETRRDVRDEFLPEPLSEELIARLLGAAHQAPSVGFMQPWNFVLVRQDETREKVWQAFQRAN
DEAAEMFSGERQAKYRSLKLEGIRKAPLSICVTCDRTRGGAVVLGRTHNPQMDLYSTVCAVQNLWLAARAEGVGVGWVSI
FHESEIKAILGIPDHVEIVAWLCLGFVDRLYQEPELAAKGWRQRLPLEDLVFEEGWGVR

The query sequence (length=219) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2isj:A 219 219 1.0000 1.0000 1.0000 1.30e-162 2isj:B, 2isj:C, 2isj:D, 2isj:E, 2isj:F, 2isj:G, 2isj:H, 2isk:A, 2isk:B, 2isk:C, 2isk:D, 2isk:E, 2isk:F, 2isk:G, 2isk:H, 2isl:A, 2isl:B, 2isl:C, 2isl:D, 2isl:E, 2isl:F, 2isl:G, 2isl:H
2 4dn2:A 191 194 0.2648 0.3037 0.2990 3.76e-14 4dn2:B
3 3ge5:A 176 177 0.2374 0.2955 0.2938 2.06e-12 3ge5:B
4 4g8s:A 182 200 0.2877 0.3462 0.3150 3.44e-12 4g8s:B
5 3gfa:A 197 213 0.2511 0.2792 0.2582 8.44e-08 3gfa:B
6 8cqt:B 164 154 0.1918 0.2561 0.2727 2.45e-07 8cqt:A
7 4eo3:A 321 191 0.2420 0.1651 0.2775 3.62e-07 4eo3:B
8 3koq:A 173 182 0.1963 0.2486 0.2363 9.36e-07 3h4o:A, 3koq:B, 3koq:C, 3koq:D
9 3gr3:A 226 201 0.2329 0.2257 0.2537 1.01e-05 3gr3:B
10 3m5k:A 168 174 0.1963 0.2560 0.2471 2.16e-05 3m5k:B
11 7tmf:B 183 163 0.2009 0.2404 0.2699 5.52e-05 7tmf:A, 7tmg:A, 7tmg:B
12 5uu6:C 236 206 0.2283 0.2119 0.2427 6.26e-05 5uu6:A, 5uu6:B, 5uu6:D
13 5ko7:B 200 78 0.1142 0.1250 0.3205 1.15e-04
14 1bkj:A 230 202 0.2283 0.2174 0.2475 1.48e-04 1bkj:B, 2bkj:A, 2bkj:B
15 2fre:A 200 189 0.2374 0.2600 0.2751 1.61e-04 2fre:B
16 5ko8:B 218 80 0.1233 0.1239 0.3375 1.74e-04 5ko7:A, 5ko8:A, 5krd:A, 5krd:B
17 5hdj:B 248 206 0.2100 0.1855 0.2233 2.37e-04 5hdj:A
18 8uc3:A 180 211 0.2785 0.3389 0.2891 2.44e-04 8uc3:B
19 3e39:A 175 144 0.1872 0.2343 0.2847 4.41e-04 3e39:B
20 3ek3:A 187 184 0.2055 0.2406 0.2446 7.43e-04
21 3gbh:B 213 175 0.2055 0.2113 0.2571 8.70e-04 3gbh:A, 3gbh:C, 3gbh:D
22 7dp0:A 223 62 0.1187 0.1166 0.4194 0.002 7dp0:B, 7dp1:A, 7dp1:B, 7dp2:A, 7dp2:B
23 3tnz:A 222 194 0.2055 0.2027 0.2320 0.002 3gfd:A, 3gfd:B, 3gh8:A, 3gh8:B, 3gh8:C, 3gh8:D, 3gh8:E, 3gh8:F, 3gh8:G, 3gh8:H, 3tnz:B
24 2i7h:A 187 179 0.1872 0.2193 0.2291 0.002 2i7h:B, 2i7h:C, 2i7h:D
25 3e10:B 167 100 0.1279 0.1677 0.2800 0.002 3e10:A
26 3bm1:A 177 161 0.2009 0.2486 0.2733 0.003 3bm1:B
27 3eo8:A 219 172 0.1963 0.1963 0.2500 0.003 3eo8:B, 3eo8:C, 3eo8:D, 3eo8:E, 3eo8:F
28 2b67:A 201 195 0.2146 0.2338 0.2410 0.003 2b67:B, 2b67:C, 2b67:D
29 1nox:A 200 68 0.1096 0.1200 0.3529 0.004
30 1nox:A 200 53 0.0822 0.0900 0.3396 2.4
31 4ttc:A 220 195 0.2055 0.2045 0.2308 0.007 4ttc:B, 4ttc:C, 4ttc:D, 4ttc:E, 4ttc:F, 5yak:A, 5yak:F, 5yak:B, 5yak:C, 5yak:D, 5yak:E
32 5j62:B 209 157 0.1689 0.1770 0.2357 0.008 5j62:A
33 3bem:B 210 179 0.1735 0.1810 0.2123 0.036 3bem:A
34 3n2s:A 248 90 0.1096 0.0968 0.2667 0.039 3n2s:B, 3n2s:C, 3n2s:D
35 4ttb:A 189 58 0.0868 0.1005 0.3276 0.043 4ttb:B
36 6pz0:A 185 178 0.1735 0.2054 0.2135 0.043 6pz0:B, 6q1b:A, 6q1b:B, 6q1l:A, 6q1l:B, 6tyk:A, 6tyk:B
37 4qlx:A 217 82 0.1096 0.1106 0.2927 0.051 4qlx:B, 4qly:A, 4qly:B, 4qly:C, 4qly:D
38 3ge6:A 210 51 0.0731 0.0762 0.3137 0.054 3ge6:B
39 1zch:A 249 216 0.2192 0.1928 0.2222 0.077
40 3gb5:A 185 56 0.0868 0.1027 0.3393 0.11 3to0:A, 3to0:B
41 3kwk:A 168 167 0.1826 0.2381 0.2395 0.27
42 6wt2:A 221 222 0.2329 0.2308 0.2297 0.35 6wt2:B, 6wt2:C, 6wt2:D
43 5j6c:A 173 193 0.1689 0.2139 0.1917 0.37 5j6c:B
44 2wzv:B 223 69 0.1096 0.1076 0.3478 0.39 2wzv:A, 2wzw:A, 2wzw:B
45 3eo7:A 487 120 0.1187 0.0534 0.2167 0.70
46 2hay:D 222 195 0.1918 0.1892 0.2154 0.91 2hay:A, 2hay:B, 2hay:C
47 8dil:A 175 159 0.1826 0.2286 0.2516 0.93 8dil:B, 8dil:C, 8dil:D, 8dil:E, 8dil:F
48 3gag:A 206 54 0.0822 0.0874 0.3333 0.98 3gag:B, 3gag:C, 3gag:D
49 3out:B 264 90 0.1005 0.0833 0.2444 1.1 3out:A, 3out:C
50 3pxv:B 189 184 0.2192 0.2540 0.2609 1.2 3pxv:A, 3pxv:C, 3pxv:D
51 1v5y:A 217 43 0.0594 0.0599 0.3023 1.2 1v5y:B, 1v5z:A, 1v5z:B, 1vfr:A, 1vfr:B
52 8qyg:B 225 51 0.0776 0.0756 0.3333 1.5 8q5g:A, 8q5g:B, 8qyg:A
53 8xjg:A 148 38 0.0639 0.0946 0.3684 1.6
54 7vqk:A 195 90 0.1142 0.1282 0.2778 2.8 7vqk:B
55 5tjr:D 468 56 0.0776 0.0363 0.3036 4.0 5tjr:A, 5tjr:B, 5tjr:E, 5tjr:F
56 6clv:C 257 52 0.0822 0.0700 0.3462 4.6 1ad4:A, 6clv:A, 6clv:B
57 7qv3:w 593 81 0.1142 0.0422 0.3086 5.2
58 7epk:A 426 36 0.0548 0.0282 0.3333 5.9
59 8dor:A 217 27 0.0457 0.0461 0.3704 7.1 8dor:B, 8dor:C, 8dor:D
60 3lot:D 313 74 0.1005 0.0703 0.2973 8.5 3lot:A, 3lot:B, 3lot:C
61 2evx:A 382 47 0.0731 0.0419 0.3404 9.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218