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BioLiP
>protein
LSYQSHDCSGACLGENPLQLPIKCHFQRRHAKTNSHSSALHVSYKTPCGRSLRNVEEVFRYLLETECNFLFTDNFSFNTY
VQLARNY

The query sequence (length=87) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8hfp:C 87 87 1.0000 1.0000 1.0000 5.46e-62 8hfp:D
2 7fhj:B 107 68 0.1954 0.1589 0.2500 0.003 7mwh:B, 7mwl:B
3 3vxv:A 65 61 0.1609 0.2154 0.2295 0.42 3vxx:A, 3vyb:A, 3vyq:A, 3vyq:D
4 8ouw:6 707 20 0.1034 0.0127 0.4500 4.5
5 3ihp:B 681 32 0.1379 0.0176 0.3750 6.0 6dxh:A, 6dxt:A, 6dxt:B, 2g43:A, 2g43:B, 2g45:A, 2g45:D, 3ihp:A, 7ms5:A, 7ms5:B, 7ms6:A, 7ms7:A, 7ms7:B, 6nft:A, 6nft:B, 6p9g:A
6 3nk3:A 284 14 0.0920 0.0282 0.5714 6.0 3nk3:B, 3nk4:A, 3nk4:B
7 3e78:A 365 55 0.1839 0.0438 0.2909 7.0 3e79:A, 3eki:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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