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BioLiP
>protein
LSWSPKVAGVMIACNILAIAFGKLTIKQQNVGTPMPSSNFFGGFGLGAVLGTASFGHILGAGVILGLANM

The query sequence (length=70) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8asp:k 77 70 1.0000 0.9091 1.0000 2.12e-44 8am5:k, 8asl:k, 6nwa:K, 6nwa:k, 6nwa:T, 7umh:K, 7umh:T, 7umh:k
2 6kif:K 78 70 0.7143 0.6410 0.7143 2.00e-27 6kif:U, 6kif:m, 6kig:K, 6kig:U, 6kig:m
3 6vpv:K 78 70 0.5714 0.5128 0.5714 1.96e-21 6vpv:k, 6vpv:9
4 6k61:k 78 70 0.5143 0.4615 0.5143 6.06e-21 6jeo:aK, 6jeo:bK, 6jeo:cK, 6jeo:dK, 6k61:K, 6tcl:K1, 6tcl:K2
5 7fix:K1 79 68 0.4429 0.3924 0.4559 1.10e-13 7fix:K2, 7fix:K3, 6tra:K, 6trc:K, 6trc:k, 6trc:9, 6trd:K, 6trd:k, 6trd:9
6 7y7b:K 78 67 0.4000 0.3590 0.4179 1.58e-12 7y8a:K
7 6tcl:K 60 69 0.4286 0.5000 0.4348 2.28e-11 6tcl:KK
8 4l6v:K 80 69 0.4143 0.3625 0.4203 9.18e-10 6hqb:K, 4l6v:k, 4l6v:0, 7o1v:K, 5oy0:K, 5oy0:k, 5oy0:8, 6uzv:K, 6uzv:k, 6uzv:8
9 8wm6:K 69 68 0.4000 0.4058 0.4118 9.70e-10 8wmj:K, 8wmv:K, 8wmw:K
10 7s3d:K 75 70 0.4857 0.4533 0.4857 1.53e-09 7s3d:T, 7s3d:k
11 7y5e:KN 70 63 0.3714 0.3714 0.4127 1.73e-09 7y5e:K2, 7y7a:K7, 7y7a:Ko
12 8wey:K 63 61 0.3429 0.3810 0.3934 1.49e-08
13 6kmx:aK 46 56 0.3429 0.5217 0.4286 2.38e-07 6kmx:bK, 6kmx:cK
14 7m75:K 47 56 0.3429 0.5106 0.4286 9.12e-07 4fe1:K, 1jb0:K, 7m76:K, 7m78:K, 3pcq:K, 6pfy:K, 6pfy:T, 6pfy:g, 6pgk:T, 6pgk:K, 6pgk:g, 5zf0:K1, 5zf0:K2, 5zf0:K3, 5zf0:K4, 5zf0:K6, 5zf0:K5
15 7qco:K 65 55 0.3286 0.3538 0.4182 1.93e-06 7qco:R, 7qco:r, 7qco:k
16 4kt0:K 53 67 0.3571 0.4717 0.3731 1.61e-05
17 8bcv:K 88 61 0.3286 0.2614 0.3770 0.002 7ew6:K, 7ewk:K, 7f9o:K, 7f9o:n, 2wse:K, 5zji:K
18 5zgb:K 59 61 0.2286 0.2712 0.2623 0.004 7blz:K, 6fos:K, 5zgh:K
19 8j6z:K 84 62 0.3000 0.2500 0.3387 0.017 7dkz:K, 8j7b:K, 5l8r:K, 4rku:K, 6yac:K, 6yez:K, 6zoo:K, 6zxs:K
20 8wgh:K 83 62 0.3000 0.2530 0.3387 0.022
21 8j7a:K 56 28 0.2000 0.2500 0.5000 0.022
22 7wfd:AK 65 28 0.2000 0.2154 0.5000 0.040 7wfe:BK, 7wg5:AK, 7wg5:BK
23 7a4p:K 86 30 0.2143 0.1744 0.5000 0.19 6zzx:K, 6zzy:K
24 4xk8:k 46 28 0.2000 0.3043 0.5000 0.26 4xk8:K
25 6igz:K 80 25 0.1857 0.1625 0.5200 0.95
26 7dr2:aK 69 58 0.3143 0.3188 0.3793 0.99 7dr0:K, 7dr2:cK
27 8htu:K 81 45 0.2000 0.1728 0.3111 3.5 7ksq:K, 7kux:K, 6l35:K, 7xqp:K
28 4y28:K 57 22 0.1571 0.1930 0.5000 3.7
29 6e4v:A 672 28 0.2000 0.0208 0.5000 5.0
30 7ufr:A 1038 31 0.1429 0.0096 0.3226 6.7 7ufr:B, 7ufr:C, 7ufr:D, 7ufu:A, 7ufu:B, 7ufu:C, 7ufu:D
31 5wyj:CB 1098 28 0.1429 0.0091 0.3571 7.6 7ajt:UV, 7aju:UV, 7d4i:RE, 7d5s:RE, 7d5t:RE, 7d63:RE, 6ke6:RE, 6lqp:RE, 6lqq:RE, 6lqr:RE, 6lqs:RE, 6lqt:RE, 6lqu:RE, 7suk:NH, 5wyk:CB, 6zqb:UV, 6zqc:UV, 6zqd:UV, 6zqe:UV
32 8x3v:B 209 36 0.1571 0.0526 0.3056 9.0 8x3v:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218