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BioLiP
>protein
LSSHWLMKSEPESRLEKGVDVKFSIEDLKAQPKQTTCWDGVRNYQARNFLRAMKLGEEAFFYHSNCKEPGIAGLMKIVKE
AYPDHTQFEKNNPHYDPSSKEDNPKWSMVDVQFVRMMKRFIPLAELKSYHQAHKATGGPLKNMVLFTRQRLSIQPLTQEE
FDFVLSLEEKEP

The query sequence (length=172) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5j3e:A 172 172 1.0000 1.0000 1.0000 1.16e-130 5j3e:B
2 8gth:E 105 38 0.0698 0.1143 0.3158 0.033 8gth:A, 8gth:B, 8gth:C, 8gth:F, 8gth:D
3 3upt:A 671 94 0.1337 0.0343 0.2447 0.12 3upt:B
4 7vex:A 412 32 0.0756 0.0316 0.4062 1.2 8h4m:A
5 2cf5:A 352 56 0.0988 0.0483 0.3036 2.1 2cf6:A
6 1gc5:A 467 66 0.1047 0.0385 0.2727 3.5 4b8s:A
7 5o5z:A 454 66 0.1047 0.0396 0.2727 4.1 5o5y:B, 5o5z:B
8 1dot:A 686 28 0.0698 0.0175 0.4286 5.2 1gv8:A, 1gvc:A, 1ovb:A
9 3anx:B 313 82 0.1337 0.0735 0.2805 9.8 3anx:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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