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BioLiP
>protein
LSQLSKQYSSRDLPSHTKIKYRQTTQDAPEEVRNRDFRRELEERERAAAREKNRRRWDDDVVFKNCAKGVDDQKKDKRFV
NDTLRSEFHKKFMEKYIK

The query sequence (length=98) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6id0:P 118 98 0.9898 0.8220 0.9898 2.57e-67 8c6j:P, 8ch6:Q, 6ff4:R, 6ff7:R, 8i0s:P, 8i0t:P, 8i0u:P, 8i0v:P, 8i0w:P, 6icz:P, 6id1:P, 5mqf:R, 7qtt:Q, 7w59:P, 7w5a:P, 7w5b:P, 5xjc:P, 5yzg:P, 5z56:P, 5z57:P
2 6zym:R 87 98 0.8878 1.0000 0.8878 1.49e-56
3 9fmd:P 106 98 0.8673 0.8019 0.8673 7.19e-54 6qdv:P
4 8ro2:P 112 112 0.8571 0.7500 0.7500 8.50e-52
5 8ro0:P 150 128 0.6735 0.4400 0.5156 4.10e-39 8ro1:P
6 3jb9:h 90 89 0.4898 0.5333 0.5393 1.75e-27
7 7b9v:P 74 24 0.0816 0.1081 0.3333 0.22 6bk8:H, 7dco:S, 6exn:P, 5gm6:S, 5gmk:S, 6j6g:S, 6j6h:S, 6j6n:S, 6j6q:S, 5lj3:P, 5lj5:P, 5mps:P, 5mq0:P, 5wsg:S, 5y88:P, 5ylz:P
8 3rde:A 552 60 0.1837 0.0326 0.3000 0.45 3rde:B, 3rde:C, 3rde:D
9 6f4a:A 644 45 0.1327 0.0202 0.2889 0.56
10 4i94:A 297 52 0.1735 0.0572 0.3269 2.8 4i94:B
11 8dqx:C 330 54 0.1633 0.0485 0.2963 3.0 8dqw:C, 8dqz:C, 8dr0:C, 8dr1:C, 8dr3:C, 8dr4:C, 8dr5:C, 8dr6:C, 8dr7:C, 8fs3:C, 8fs4:C, 8fs5:C, 8fs6:C, 8fs7:C, 8fs8:C, 7sgz:C, 7sh2:C, 7st9:C, 7stb:C, 7ste:C, 1sxj:C, 7tfh:C, 7tfi:C, 7tfj:C, 7tfk:C, 7tfl:C, 7thj:C, 7thv:C, 8thb:C, 8thc:C, 8thd:C, 7ti8:C, 7tib:C, 7tic:C, 7tid:C, 7tku:C, 8tw7:3, 8tw8:3, 8twa:3, 8twb:3, 7u19:C, 7u1a:C, 7u1p:C
12 2ww2:B 737 66 0.1531 0.0204 0.2273 8.3
13 7v1v:A 447 107 0.2755 0.0604 0.2523 8.4 7v1v:F, 7v1v:B, 7v1v:E, 7v1v:C, 7v1v:D, 7v1w:A, 7v1w:C, 7v1w:B, 7v1w:D, 7v1w:E, 7v1w:F, 7v1x:A, 7v1x:D, 7v1x:B, 7v1x:C, 7v1x:F, 7v1x:E
14 8slw:A 921 51 0.1327 0.0141 0.2549 9.5 8slp:D, 8slp:A, 8slp:B, 8slp:C, 8slw:B, 8slw:C, 8slw:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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