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BioLiP
>protein
LSQEESTLIERATATINSIPISEDYSVASAALSSDGRIFTGVNVYHFTGGPCAELVVLGTAAAAAAGNLTCIVAIGNENR
GILSPCGKCRQVLLDLHPGIKAIVKDSDGQPTAVGIRELLPSGYV

The query sequence (length=125) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2z3i:A 129 125 0.9840 0.9535 0.9840 3.05e-87 1wn5:A, 1wn5:B, 1wn5:C, 1wn5:D, 1wn6:A, 1wn6:B, 2z3g:A, 2z3g:B, 2z3g:C, 2z3g:D, 2z3h:A, 2z3h:B, 2z3h:C, 2z3h:D, 2z3i:B, 2z3i:C, 2z3i:D, 2z3j:A, 2z3j:B, 2z3j:C, 2z3j:D
2 3oj6:A 134 124 0.6880 0.6418 0.6935 2.46e-47 3oj6:B, 3oj6:C, 3oj6:D
3 3mpz:A 125 102 0.3040 0.3040 0.3725 2.56e-12 3mpz:B, 3mpz:C, 3mpz:D
4 1mq0:A 130 102 0.2400 0.2308 0.2941 7.35e-12 1mq0:B
5 2fr6:A 137 102 0.2400 0.2190 0.2941 3.16e-11 2fr5:A, 2fr5:C, 2fr5:B, 2fr5:D, 2fr6:C, 2fr6:B, 2fr6:D, 1zab:A, 1zab:C, 1zab:B, 1zab:D
6 3dmo:A 133 106 0.2720 0.2556 0.3208 5.82e-11 3dmo:B, 3dmo:C, 3dmo:D
7 4wig:A 126 108 0.3040 0.3016 0.3519 3.42e-10 3ijf:X, 4wif:A, 4wif:B, 4wig:B
8 1jtk:A 131 103 0.2320 0.2214 0.2816 2.27e-09 1jtk:B, 1uwz:A, 1uwz:B, 1ux0:A, 1ux0:B, 1ux1:A, 1ux1:B, 1ux1:C, 1ux1:D
9 6kw6:A 119 97 0.3040 0.3193 0.3918 4.00e-09 6kw6:B
10 2d30:A 124 106 0.2560 0.2581 0.3019 1.51e-08 2d30:B
11 3r2n:D 122 111 0.2880 0.2951 0.3243 3.05e-08 3r2n:A, 3r2n:B, 3r2n:C
12 4f3w:B 121 101 0.3040 0.3140 0.3762 5.94e-08 4f3w:A, 4f3w:C, 4f3w:D
13 7zob:E 136 127 0.2720 0.2500 0.2677 1.21e-04 7zob:A, 7zob:B, 7zob:C, 7zob:D, 7zob:F, 7zob:G, 7zob:H
14 1r5t:A 141 105 0.2320 0.2057 0.2762 1.74e-04 1r5t:B, 1r5t:C, 1r5t:D
15 6wfy:L 215 86 0.2080 0.1209 0.3023 0.26
16 4eg2:A 297 111 0.2400 0.1010 0.2703 0.44 4eg2:B, 4eg2:C, 4eg2:D, 4eg2:E, 4eg2:F, 4eg2:G, 4eg2:H
17 7pug:A 829 130 0.3360 0.0507 0.3231 0.72 7pxq:A
18 8etg:E 145 84 0.2080 0.1793 0.3095 1.8
19 1af2:A 294 41 0.0960 0.0408 0.2927 2.3 1aln:A, 1ctt:A, 1ctu:A
20 9b1u:A 298 57 0.1360 0.0570 0.2982 2.4 9b1v:A
21 2ce8:A 337 59 0.1600 0.0593 0.3390 3.3 2ce8:C, 2ce9:A, 2ce9:C, 1gxr:A, 5mwj:A, 5mwj:B
22 1tv2:A 457 86 0.1840 0.0503 0.2674 3.8 1tv3:A, 1tv4:A
23 8eui:E 183 57 0.1520 0.1038 0.3333 5.0 8esq:E, 8esr:E, 8etc:E, 8eth:E, 8eti:E, 8etj:E, 8eug:E, 8eup:E, 8euy:E, 8ev3:E
24 6k63:A 294 17 0.0640 0.0272 0.4706 6.8 6k63:B, 6k63:C, 6k63:D
25 2xt3:A 300 74 0.1600 0.0667 0.2703 6.9 4a14:A
26 1a8j:L 216 31 0.0720 0.0417 0.2903 6.9 1a8j:H, 5acl:A, 5acm:A, 5acm:B, 8fo3:A, 8fo3:B, 8fo3:C, 8fo3:D, 8fo3:H, 8fo3:I, 8fo3:J, 8fo3:F, 8fo3:K, 8fo3:L, 8fo4:B, 8fo4:D, 8fo5:A, 8fo5:B, 8fo5:C, 8fo5:D, 3gjf:L, 5gkr:B, 3hae:L, 3hae:G, 3hae:N, 3hae:S, 1mcb:A, 1mcb:B, 1mcc:A, 1mcc:B, 1mcd:A, 1mcd:B, 1mce:A, 1mce:B, 1mcf:A, 1mcf:B, 1mch:A, 1mch:B, 1mci:A, 1mci:B, 1mcj:A, 1mcj:B, 1mck:A, 1mck:B, 1mcl:A, 1mcl:B, 1mcn:A, 1mcn:B, 1mcq:B, 1mcr:A, 1mcr:B, 1mcs:A, 1mcs:B, 7uel:L
27 7o9m:n 215 29 0.1040 0.0605 0.4483 8.5 2nyu:A, 2nyu:B, 7o9k:n, 7ods:z
28 8af0:A 123 38 0.0960 0.0976 0.3158 8.7 8af0:B, 9bdl:ANG, 9bdn:ANG, 9bdp:ANG, 5epz:A, 5eqo:A, 1h52:A, 1h53:A, 1hby:A, 7npm:AAA
29 3go1:L 209 31 0.0720 0.0431 0.2903 9.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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