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BioLiP
>protein
LSPNLIGFNSNEGEKLLLTSRSREDFFPLSMQFVTQVNQAYCGVASIIMVLNSLGINAPETAQYSPYRVFTQDNFFSNEK
TKAVIAPEVVARQGMTLDELGRLIASYGVKVKVNHASDTNIEDFRKQVAENLKQDGNFVIVNYLRKEIGQERGGHISPLA
AYNEQTDRFLIMDVSRYKYPPVWVKTTDLWKAMNTVDSVSQKTRGFVFVS

The query sequence (length=210) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6tho:A 220 210 1.0000 0.9545 1.0000 8.04e-159 2btw:A, 2btw:B, 2bu3:A, 2bu3:B, 6th5:A, 6th5:B, 6tho:B, 6tjl:A, 6tjl:B
2 6cq2:A 688 103 0.1429 0.0436 0.2913 1.5 6cqi:A
3 6rxt:US 451 46 0.0810 0.0377 0.3696 2.0 6rxu:US, 6rxv:US, 6rxy:US, 6rxz:US
4 1ebd:A 455 52 0.0857 0.0396 0.3462 2.4 1ebd:B
5 6muk:A 363 28 0.0524 0.0303 0.3929 2.5
6 7xcm:A 494 118 0.1429 0.0607 0.2542 2.7 7xcm:B, 7xcm:C, 7xcm:D, 7xcm:E, 7xcm:F, 7xcn:A, 7xcn:B, 7xcn:C, 7xcn:D, 7xcn:E, 7xcn:F
7 5wxu:B 400 67 0.1095 0.0575 0.3433 3.3 5wxu:A, 5wxu:D, 5wxu:F, 5wxu:C, 5wxu:E
8 7wwp:A 420 42 0.0714 0.0357 0.3571 3.9 7wwq:A
9 6pcm:A 793 124 0.1667 0.0441 0.2823 4.2 6pcm:B
10 5mqr:A 1082 85 0.0952 0.0185 0.2353 4.4 5mqs:A
11 6agm:A 334 57 0.0810 0.0509 0.2982 5.3 6agm:B, 6agm:C, 6agm:D
12 7obb:A 1510 69 0.0952 0.0132 0.2899 5.6
13 7ob9:A 1535 69 0.0952 0.0130 0.2899 5.7 7oba:A
14 7vbc:A 1477 69 0.0952 0.0135 0.2899 5.8 7vba:A, 7vbb:A
15 5og1:A 819 81 0.1095 0.0281 0.2840 6.8 5ofo:C, 5ofo:F, 5ofo:E, 5ofo:D, 5ofo:B, 5ofo:A, 5og1:E, 6rn2:A, 6rn2:B, 6rn2:C, 6rn2:D, 6rn2:F, 6rn2:E, 6rn3:A, 6rn3:B, 6rn3:C, 6rn3:D, 6rn3:E, 6rn4:B, 6rn4:C, 6rn4:D, 6rn4:E
16 7e7q:A 1958 64 0.0857 0.0092 0.2812 8.0
17 8czq:A 655 61 0.0952 0.0305 0.3279 8.8
18 8q5t:A 280 51 0.0810 0.0607 0.3333 9.6 8q50:A, 8q5t:B, 8q5t:C, 8q5t:D, 8q5v:A, 8q5v:B, 8q5v:C, 8q5v:D, 8q5v:E, 8q5v:F, 8q5v:G, 8q5v:H, 8q5v:J, 8q5v:K, 8q5v:L, 8q5v:M
19 7wao:A 502 52 0.0810 0.0339 0.3269 10.0 7waj:A, 7wak:A, 7wal:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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