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BioLiP
>protein
LSPEEAAHQKAVVETLLQEDPWRVAKMVKSYLQQHNIPQREVVDTTGLNQSHLSQHLNKGTPMKTQKRAALYTWYVRKQR
EVAQQFTHRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRR
KEEA

The query sequence (length=164) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8pi9:B 177 169 1.0000 0.9266 0.9704 1.67e-119 1ic8:A, 1ic8:B, 8pi7:A, 8pi7:B, 8pi8:A, 8pi8:B, 8pi9:A, 8pia:A, 8pia:B
2 2h8r:A 176 168 0.8476 0.7898 0.8274 9.83e-104 2h8r:B
3 4j19:A 77 73 0.1524 0.3247 0.3425 1.17e-04 4j19:B
4 8x7u:D 654 59 0.1098 0.0275 0.3051 2.3 8x7u:E, 8x7u:C, 8x7u:B, 8x7u:F, 8x7u:A
5 7qrc:B 61 27 0.0732 0.1967 0.4444 4.7 7qrc:A
6 4omy:A 97 62 0.1220 0.2062 0.3226 8.7 4omy:B, 4omy:C, 4omy:D, 4on0:A, 4on0:B, 4on0:C, 4on0:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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