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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
LSNKLTLDKLDVKGKRVVMRVDFNVPMKNNQITNNQRIKAAVPSIKFCLDNGAKSVVLMSHLGRPDGVPMPDKYSLEPVA
VELKSLLGKDVLFLKDCVGPEVEKACANPAAGSVILLENLRFHVEEEGKGKKAEPAKIEAFRASLSKLGDVYVNDAFGTA
HRAHSSMVGVNLPQKAGGFLMKKELNYFAKALESPERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLN
NMEIGTSLFDEEGAKIVKDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQATVASGIPAGWMGLDCGPESSKKYAEAVT
RAKQIVWNGPVGVFEWEAFARGTKALMDEVVKATSRGCITIIGGGDTATCCAKWNTEDKVSHVSTGGGASLELLEGKVLP
GVDALSNI

The query sequence (length=408) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4o33:A 417 415 0.9975 0.9760 0.9807 0.0 4axx:A, 3c3a:B, 3c3b:A, 3c3b:B, 3c3c:A, 1hdi:A, 1kf0:A, 5m1r:A, 5m3u:A, 5m6z:A, 5mxm:A, 5np8:A, 4o3f:A, 5o7d:A, 1vjc:A, 1vjd:A, 2wzb:A, 2wzc:A, 2wzd:A, 2x13:A, 2x14:A, 2x15:A, 2xe7:A, 2xe8:A, 2y3i:A, 2y3i:D, 2ybe:A, 2zgv:A, 3zoz:A
2 2paa:A 413 412 0.8554 0.8450 0.8471 0.0
3 3pgk:A 415 412 0.6422 0.6313 0.6359 0.0 1qpg:A
4 1ltk:C 424 415 0.6054 0.5825 0.5952 3.92e-172 1ltk:A, 1ltk:B
5 6yje:A 416 415 0.5907 0.5793 0.5807 3.20e-166 6yjf:A
6 1vpe:A 398 405 0.4877 0.5000 0.4914 1.61e-133
7 1php:A 394 407 0.4779 0.4949 0.4791 3.73e-120
8 13pk:A 415 422 0.4559 0.4482 0.4408 6.53e-114 13pk:B, 13pk:C, 13pk:D, 16pk:A
9 3zlb:A 398 406 0.4681 0.4799 0.4704 1.77e-111
10 4fey:A 392 406 0.4240 0.4413 0.4261 1.07e-101
11 4ng4:B 389 407 0.4093 0.4293 0.4103 9.21e-93 4ng4:A, 4ng4:C
12 1zmr:A 386 404 0.3701 0.3912 0.3738 1.69e-76
13 3fwn:A 467 133 0.0809 0.0707 0.2481 0.067 3fwn:B, 2zya:A, 2zya:B, 2zyd:A, 2zyd:B
14 1nvm:B 312 60 0.0417 0.0545 0.2833 2.0 1nvm:D, 1nvm:H
15 2oo4:A 226 67 0.0490 0.0885 0.2985 4.0 2oo4:B
16 6hqv:A 1555 38 0.0343 0.0090 0.3684 4.7 6hqv:B
17 2w90:B 471 148 0.0882 0.0764 0.2432 5.9 2w8z:A, 2w8z:B, 2w90:A
18 4ha3:A 489 37 0.0343 0.0286 0.3784 6.6 4ha4:A
19 3zs6:A 506 40 0.0368 0.0296 0.3750 7.6
20 2iz1:B 471 106 0.0613 0.0531 0.2358 9.5 2iyo:A, 2iyp:A, 2iyp:B, 2iyp:C, 2iz0:A, 2iz0:B, 2iz0:C, 2iz1:A, 2iz1:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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