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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
LSLVSILSSAANDSSIESEARSIASLIASEIVSKIGKTEFKSVQEAFDKIQSIFADGTPDFLKMTREILTVGLIPADILS
FLNGYLNLDLNSIHNRNPSPKGQAIYPVKAPGDARYSVAENALRAAIHIPASFGYGKNGKKPVILVPGTATPAGTTYYFN
FGKLGSAADADVVWLNIPQASLNDVQINSEYVAYAINYISAISESNVAVLSWSQGGLDTQWALKYWPSTRKVVDDFIAIS
PDFHGTVMRSLVCPWLAALACTPSLWQQGWNTEFIRTLRGGGGDSAYVPTTTIYSTFDEIVQPMSGSQASAILSDSRAVG
VSNNHLQTICGGKPAGGVYTHEGVLYNPLAWALAVDALSHDGPGDPSRLDLDVVCGRVLPPQLGLDDLLGTEGLLLIALA
EVLAYKPKTFGEPAIASYAH

The query sequence (length=420) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6idy:A 421 421 0.9905 0.9881 0.9881 0.0 6idy:B, 6idy:C
2 7v6d:A 367 338 0.4262 0.4877 0.5296 6.50e-117 7v6d:B
3 3icw:A 291 219 0.1929 0.2784 0.3699 7.86e-34
4 6isp:C 319 219 0.1929 0.2539 0.3699 2.08e-32 5gv5:A, 5gv5:B, 5gv5:C, 5gv5:D, 5gv5:E, 5gv5:F, 5gv5:G, 5gv5:H, 6isp:D, 6isp:A, 6isp:B, 6j1t:A, 1lbs:A, 1lbs:B, 1lbs:C, 1lbs:D, 1lbs:E, 1lbs:F, 1lbt:A, 1lbt:B, 1tcb:B, 1tcc:B, 6tp8:A, 6tp8:B, 6tp8:C
5 7v3k:C 294 153 0.0857 0.1224 0.2353 0.002 7v3k:A, 7v3k:B
6 5h6b:A 252 112 0.0762 0.1270 0.2857 0.071
7 4xeq:B 304 56 0.0429 0.0592 0.3214 2.9 4xeq:A, 4xeq:C, 4xeq:D
8 5j1s:B 235 91 0.0500 0.0894 0.2308 3.5
9 2xzl:A 756 79 0.0476 0.0265 0.2532 6.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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