Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
LSLQAREELSRKSNELQYHVVTQDWFGQRVDDFVTQHHPEWDYETVKRLVQQGHIYRYRKNGKKRYTRLTDRLEFDELVV
VPTASFWERQLAPPSGVFHLSAKTREMAQEMVLFKNEHVIVINKPSGVPIMPTHDPLAMNITDLLPAWRYTNTQTPVICH
NLDTETSGCVVLARSANTHRMLGRMFVKRVVPNSVYWGFAVGKPPVNFGRIRMHFEVQKGQGGDVIVARPTPTADSKVGI
AEFVVNASALEFGSFISFYPLTTRRHQERIMAAHALRAPLLGDAKYGGESAFPHSLSLFWDPARKDVPLHLHHRKIQLPY
KNGAGEFVCVTAPLPPHMEKTFKRLGWPVDA

The query sequence (length=351) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7am2:BZ 351 351 1.0000 1.0000 1.0000 0.0
2 6yxx:EC 373 358 0.7778 0.7319 0.7626 0.0 7aoi:XP, 6yxy:EC
3 5uba:A 261 254 0.2023 0.2720 0.2795 7.98e-17
4 2i82:A 217 181 0.1396 0.2258 0.2707 1.46e-07 2i82:B, 2i82:C, 2i82:D
5 7bl5:7 317 328 0.2080 0.2303 0.2226 5.85e-04
6 3edd:B 597 54 0.0627 0.0369 0.4074 0.34 3edd:A, 3ede:A, 3ede:B, 3edf:A, 3edf:B, 3edj:A, 3edj:B, 3edk:A, 3edk:B, 1h3g:A, 1h3g:B
7 3e1y:A 380 103 0.0798 0.0737 0.2718 5.9 3e1y:B, 6xa1:j

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218