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BioLiP
>protein
LSLEGIGAVLQMTDDYTIIRSLVAGGPAALSKQLGEGDRIIGVGQEGEDVVDVVGWRLDDVVQLIKGPKGSKVKLLVLPE
GKDAKSHVVTIVRDKIRL

The query sequence (length=98) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6bxg:A 98 98 1.0000 1.0000 1.0000 2.38e-63
2 8xud:D 651 98 0.6939 0.1045 0.6939 3.01e-40 6iqq:C, 6iqq:D, 5wql:D, 5wql:C, 8xud:C
3 4xh7:A 110 62 0.1939 0.1727 0.3065 0.033
4 4c2c:A 433 76 0.2755 0.0624 0.3553 0.038 4c2d:A, 4c2d:B, 4c2d:C, 4c2f:A, 4c2g:A
5 2i0i:A 81 26 0.1531 0.1852 0.5769 0.089 2i0i:B, 2i0i:C
6 1u38:A 89 59 0.2245 0.2472 0.3729 0.13
7 4wsi:A 372 51 0.1939 0.0511 0.3725 0.16 7m4r:A, 7ntj:B, 7ntj:A, 7ntk:A, 7ntk:D, 7ntk:B, 7ntk:F, 7qcs:A, 7qcs:B, 4uu5:A, 4wsi:B
8 2kpl:A 129 63 0.2245 0.1705 0.3492 0.16
9 4gyl:A 340 29 0.1122 0.0324 0.3793 0.29 4gyn:A, 4kzf:A
10 5n7d:A 423 63 0.2245 0.0520 0.3492 0.30 2i04:A, 2i04:B, 5n7d:B, 5n7f:A, 5n7f:B, 5n7g:A, 7p71:A, 7p71:B, 6twq:B, 6twq:A, 6twu:B, 6twu:A, 6twx:B, 6twx:A, 6twy:B, 6twy:A
11 3jxt:A 96 26 0.1327 0.1354 0.5000 0.36 3jxt:B
12 7d6f:A 87 82 0.2653 0.2989 0.3171 1.1
13 3jyn:A 325 46 0.1735 0.0523 0.3696 1.1
14 5heb:A 119 26 0.1327 0.1092 0.5000 1.3 1be9:A, 5d13:B, 5d13:A, 5d13:C, 5d13:D, 5hed:A, 5hey:A, 5hf1:A, 5hfb:A, 5hfc:A, 5hfe:A, 5hff:A, 1tp3:A, 1tp5:A
15 5x3j:A 718 30 0.1531 0.0209 0.5000 1.8 5x3j:B, 5x3k:A, 5x3k:B
16 4pne:B 272 57 0.2041 0.0735 0.3509 3.2 4pne:A
17 8p0a:B 314 39 0.1327 0.0414 0.3333 3.5
18 2pkp:A 167 55 0.1633 0.0958 0.2909 3.7
19 5otf:A 411 34 0.1122 0.0268 0.3235 5.3 5ote:A, 3qfv:A, 3qfv:B, 3tku:A, 3tku:B, 4uak:A, 4ual:A
20 3bpu:A 86 48 0.1939 0.2209 0.3958 6.3
21 4l5j:A 308 65 0.2551 0.0812 0.3846 7.0 4l4z:A, 4l4z:B, 4l50:A, 4l50:B, 4l51:A, 4l51:B, 4l5j:B, 4l5j:C, 4l5j:D
22 8her:B 166 61 0.1735 0.1024 0.2787 7.2
23 9cuz:A 537 19 0.0714 0.0130 0.3684 7.6 9cuz:B, 9cuz:C, 9cuz:D, 9cuz:E, 9cuz:F, 9cuz:G, 9cuz:H, 9cuz:I, 9cuz:J, 9cuz:K, 9cuz:L, 9cuz:M, 9cuz:N, 9cuz:O, 9cuz:P, 9cuz:Q, 9cuz:R, 9cuz:S, 9cuz:T, 9cuz:U, 9cuz:V, 9cuz:W, 9cuz:X, 9cuz:Y, 9cuz:Z, 9cuz:a, 9cuz:b, 9cuz:c, 9cuz:d, 9cuz:e, 9cuz:f, 9cuz:g, 9cuz:h, 9cuz:i, 9cuz:j, 9cuz:k, 9cuz:l, 9cuz:m, 9cuz:n, 9cuz:o, 9cuz:p, 9cuz:q, 9cuz:r, 9cuz:s, 9cuz:t, 9cuz:u, 9cuz:v, 9cuz:w, 9cuz:x, 9cuz:y, 9cuz:z, 9cuz:1, 9cuz:2, 9cuz:3, 9cuz:4, 9cuz:5, 9cuz:6, 9cuz:7, 9cuz:8
24 6dii:H 616 36 0.1122 0.0179 0.3056 7.9 6dii:A, 6dii:B, 6dii:C, 6dii:D, 6dii:E, 6dii:F, 6dii:G, 6dii:I, 6dii:J, 6dii:K, 6dii:L, 8ey1:D, 8ey1:F, 8ey1:H, 8ey1:J, 8ey1:L, 8ey9:B, 8ey9:E, 8ey9:F, 8ey9:G, 8ey9:H, 8ey9:I
25 4hjv:C 185 59 0.1633 0.0865 0.2712 8.1 4hjv:A, 4hjv:D, 4hjv:B
26 5wwx:A 84 50 0.1837 0.2143 0.3600 8.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218