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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
LSKIIFRLLLNVLMSIIAIISYQWYEQLGIHLTVAPFSLLGIAIAIFLGFRNSASYSRFVEARNLWGTVLIAERTLVRQL
RNILPAEHDAHRRIVSYLVAFSWSLKHQLRKTDPTADLRRLLPEERVTEILASSMPTNRILLLAGNEIGQLREAGKLSDI
TYGLMDNKLDELAHVLGGCERLATTPVPFAYTLILQRTVYLFCTLLPFALVGDLHYMTPFVSVFISYTFLSADSLAEELE
DPFGTAANDLPLNAMCNTIERNLLDMTGQHPL

The query sequence (length=272) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6iv3:A 274 269 0.9890 0.9818 1.0000 0.0 6iv0:A, 6iv0:B, 6iv0:C, 6iv0:D, 6iv0:E, 6iv1:A, 6iv1:B, 6iv1:C, 6iv1:D, 6iv1:E, 6iv2:A, 6iv2:B, 6iv2:C, 6iv2:D, 6iv2:E, 6iv3:B, 6iv3:C, 6iv3:D, 6iv3:E, 6iv4:A, 6iv4:B, 6iv4:C, 6iv4:D, 6iv4:E, 6ivj:A, 6ivj:B, 6ivj:C, 6ivj:D, 6ivj:E, 6ivk:A, 6ivk:B, 6ivk:C, 6ivk:D, 6ivk:E, 6ivl:A, 6ivl:B, 6ivl:C, 6ivl:D, 6ivl:E, 6ivm:A, 6ivm:B, 6ivm:C, 6ivm:D, 6ivm:E, 6ivn:A, 6ivn:B, 6ivn:C, 6ivn:D, 6ivn:E, 6ivo:A, 6ivo:B, 6ivo:C, 6ivo:D, 6ivo:E, 6ivp:A, 6ivp:B, 6ivp:C, 6ivp:D, 6ivp:E, 6ivq:A, 6ivq:B, 6ivq:C, 6ivq:D, 6ivq:E, 6ivr:A, 6ivr:B, 6ivr:C, 6ivr:D, 6ivr:E, 6ivw:A, 6ivw:B, 6ivw:C, 6ivw:D, 6ivw:E, 6jlf:A, 6jlf:B, 6jlf:C, 6jlf:D, 6jlf:E, 4wd7:A, 4wd7:B, 4wd7:C, 4wd7:D, 4wd7:E, 4wd8:A, 4wd8:B, 4wd8:C, 4wd8:D, 4wd8:E, 5x87:A, 5x87:B, 5x87:C, 5x87:D, 5x87:E
2 7pl9:A 994 241 0.2316 0.0634 0.2614 4.88e-17 7pl9:B, 7pl9:C, 7pl9:D, 7pl9:E
3 8xgc:I 745 127 0.1324 0.0483 0.2835 0.52
4 8b9a:X 665 122 0.1213 0.0496 0.2705 0.84 8b9b:X, 8b9c:X, 7pmk:X, 7pmn:X
5 5yzg:D 1908 32 0.0551 0.0079 0.4688 1.9 6ahd:D, 8bc8:B, 8bc9:B, 8bca:B, 8bcb:B, 8bcc:B, 8bcd:B, 8bce:B, 8bcf:B, 8bcg:B, 8bch:B, 7bdi:B, 7bdj:B, 7bdk:B, 7bdl:B, 4f92:B, 4f93:B, 6ff7:r, 8h6k:5D, 8h6l:5D, 4kit:B, 5o9z:C, 7os1:B, 8qo9:B, 8qzs:B, 5urj:A, 5urk:A, 5urm:A, 5urm:B, 5xjc:D
6 8d1e:D 376 134 0.1250 0.0904 0.2537 4.9 8d1e:E, 8d1e:C, 8d1e:A, 8d1e:B, 8d1f:C, 8d1f:E, 8d1f:A, 8d1f:D, 8d1f:B, 8d1g:A, 8d1g:B, 8d1g:E, 8d1g:C, 8d1g:D, 8d1h:E, 8d1h:B, 8d1h:A, 8d1h:C, 8d1h:D, 8d1n:E, 8d1n:D, 8d1n:A, 8d1n:C, 8d1n:B, 8ecy:E, 8ecy:C, 8ecy:G, 8ecy:K, 8ecy:N, 6vx6:E, 6vx6:A, 6vx6:B, 6vx6:C, 6vx6:D, 6vx7:C, 6vx7:A, 6vx7:B, 6vx7:E, 6vx7:D
7 8u2r:A 664 82 0.0809 0.0331 0.2683 6.6 8sf3:A, 8u2s:A, 8u2s:B, 8u2t:A, 8u2u:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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