Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
LSKGENVPYTFQDEQVRSNPYIYKNHSGKLVCKLCNTMHMSWSSVERHLGGKKHGLNVLRRGISIEKAAAAAAAAAAAAA
AAAGSVGLAIQVNYSSEVKENSVDSDDKAKVPPLIRIVSGLELSDTKQKGKKFLVIAYEPFENIAIELPPNEILFSENND
MDNNNDGVDELNKKCTFWDAISKLYYVQ

The query sequence (length=188) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6g90:U 196 196 1.0000 0.9592 0.9592 6.72e-138 7oqb:U, 7oqe:U
2 7dco:v 207 188 0.9149 0.8309 0.9149 2.08e-126 5gm6:I, 5zwm:v, 5zwo:v
3 5nrl:U 196 196 0.9202 0.8827 0.8827 6.79e-118
4 8i0r:v 173 136 0.2181 0.2370 0.3015 1.66e-10 7abg:F, 7abh:F, 6ff4:7, 6ff7:7, 8i0p:v, 8i0t:v, 7q4o:1, 7q4p:1, 8qo9:G, 6qx9:A2, 8qxd:8, 8r0a:8, 8r0b:8, 8rm5:8, 7vpx:B
5 8ch6:I 185 173 0.2447 0.2486 0.2659 3.61e-09 7abi:F, 7onb:M, 7qtt:I, 5z56:v, 5z57:v
6 8idf:A 459 27 0.0585 0.0240 0.4074 1.0
7 1zu1:A 127 72 0.1117 0.1654 0.2917 1.2
8 6iw6:A 438 79 0.1011 0.0434 0.2405 1.4 6iw6:B
9 5kd2:A 591 68 0.0904 0.0288 0.2500 1.4 5kd5:A, 5kd8:A
10 8ost:A 390 79 0.1011 0.0487 0.2405 1.7
11 8oki:B 1101 39 0.0798 0.0136 0.3846 4.2 8cro:B, 8orq:B, 8p2i:B, 8rbo:B
12 5cqx:B 116 61 0.0851 0.1379 0.2623 7.8 5cqx:A, 5cqy:A, 5cqy:B, 5cr2:A, 5cr2:B, 5cr2:C
13 6hif:G 531 18 0.0532 0.0188 0.5556 8.5 6hif:I, 6hif:H, 6hif:A, 6hif:C, 6hif:B, 6hif:D, 6hif:F, 6hif:E, 6hif:J, 6hif:L, 6hif:K, 6hif:M, 6hif:O, 6hif:N, 6hif:P, 6hif:R, 6hif:Q, 6hif:S, 6hif:U, 6hif:T, 6hif:V, 6hif:X, 6hif:W

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218