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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
LSADSIFNIVEEQTFQYFWDGAEPVSGMARERYHVDGNYPENDMNVVTSGGSGFGVMALLVGIERGYISREQGLERLMKI
VSFLEKADRFHGAWPHWLYGETGKVKPFGQKDNGGDLVETSFMIQGLLCVRQYFANGNEQEKALAARIDQLWKAVEFSWY
RNGKNVLYWHWSPNYKWQMNFPVTGYNECLIMYILAAASPTHGIPAEVYHEGWAKSGAIKDSINAYGHTLKLSHNFAKEY
GGPLFWSHYSYLGLDPHGLKDRYADYWENNLNHVLINREWCIQNPKHYKGYGPDSWGLTASYSVKGYAAHAPGENNDLGV
ISPTAALSSMPYTPEYSKQAMVHWYNDMRTKIFGKYGFYDAFSETENWYPQQYLAIDQGPIVVMMENYRSGLLWKLFMSC
PEVQAGLKKLDFQSPYLKLEHHHHHH

The query sequence (length=426) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5gzh:A 426 426 1.0000 1.0000 1.0000 0.0 5gzh:B, 5gzk:A, 5gzk:B
2 5z06:B 698 431 0.4812 0.2937 0.4756 9.25e-134 5z06:A
3 8sp4:A 859 62 0.0399 0.0198 0.2742 1.0 8spg:A
4 8rf0:A 2780 106 0.0657 0.0101 0.2642 2.4 8rfe:A, 8rfg:A
5 4gaa:A 606 82 0.0469 0.0330 0.2439 2.8 4gaa:B
6 7p4l:B 478 34 0.0282 0.0251 0.3529 3.1 7p4l:A, 7p4l:C
7 6r48:B 309 47 0.0329 0.0453 0.2979 4.5 6l1g:A, 6l1g:B, 6r48:A
8 4tr0:A 92 9 0.0211 0.0978 1.0000 7.5 4tr0:B, 4tr1:A, 4tr1:B
9 8cmo:2 70 24 0.0235 0.1429 0.4167 7.5
10 7z3g:A 140 62 0.0446 0.1357 0.3065 8.0 7z3b:A, 7z3b:B, 7z3f:A, 7z3f:B, 7z3g:B, 7z3i:A, 7z3i:B
11 3emq:A 331 30 0.0329 0.0423 0.4667 9.6 3emz:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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