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BioLiP
>protein
LRYGLLAAILGDKTTKKLHEYSRVITVDGNICSGKNKLAKEIAQQLGMKHYPEAGIQYSSTTTGDGRPLDIEFSGSCSLE
KFYDDPKSNDGNSYRLQSWLYASRLLQYADALEHLLSTGQGVVLERSIYSDFVFLEAMYNQGYIRKQCVDHYNEIKRLTL
PEYLPPHAVIYIDVPVPEVQSRIQKKGDPHEMKVTSAYLQDIENAYKKTFLPKMSEMCEVLVYDSWEAEDPTKVVEDIEY
LKYNKGPWLKQDDWTFHYLRMLVQDKTEVLNYTTIPVYLPEITIGAHQGSRIYNSFRELPGRKYAPGYNAEVGDKWIWLK

The query sequence (length=320) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7ak5:O 320 320 1.0000 1.0000 1.0000 0.0 7ak6:O, 7b93:O, 8c2s:O, 8ca3:O, 8ca5:O, 6g2j:O, 6g72:O, 8iao:O, 8iaq:O, 8ib4:O, 8ib6:O, 8ib9:O, 8ibb:O, 8ibd:O, 8ibf:O, 8ic2:O, 8ic4:O, 8olt:O, 8om1:O, 7psa:O, 8pw5:O1, 8pw6:O1, 8pw7:O1, 8rgp:O, 8rgq:O, 8rgr:O, 8rgt:O, 6zr2:O, 6ztq:O
2 8ud1:1O 320 320 0.7875 0.7875 0.7875 0.0 8ueo:1O, 8uep:1O, 8ueq:1O, 8uer:1O, 8ues:1O, 8uet:1O, 8ueu:1O, 8uev:1O, 8uew:1O, 8uex:1O, 8uey:1O, 8uez:1O, 8ugh:1O, 8ugi:1O, 8ugj:1O, 8ugn:1O, 8ugn:5O, 8ugr:1O, 8ugr:5O, 7v2c:w, 7v2d:w, 7v2e:w, 7v2f:w, 7v2h:w, 7v2k:w, 7v2r:w, 7v30:w, 7v31:w, 7v32:w, 7v33:w, 7v3m:w, 7vbl:w, 7vbp:w, 7vc0:w, 7vwl:w, 7vxs:w, 7vy1:w, 7vy9:w, 7vye:w, 7vyg:w, 7vyi:w, 7vys:w, 7vz8:w, 7vzv:w, 7vzw:w, 7w00:w, 7w0h:w, 7w0r:w, 7w0y:w, 7w1o:w, 7w1p:w, 7w1t:w, 7w1u:w, 7w1v:w, 7w1z:w, 7w20:w, 7w2k:w, 7w2l:w, 7w2r:w, 7w2u:w, 7w2y:w, 7w31:w, 7w32:w, 7w35:w, 7w4c:w, 7w4d:w, 7w4e:w, 7w4f:w, 7w4g:w, 7w4j:w, 7w4k:w, 7w4l:w, 7w4m:w, 7w4n:w, 7w4q:w
3 8q0a:O 320 320 0.7781 0.7781 0.7781 0.0 8q0f:O, 8q0j:O, 8q0m:O, 8q0o:O, 8q0q:O, 8q1p:O, 8q1u:O, 8q1y:O, 8q25:O, 8q45:O, 8q46:O, 8q47:O, 8q48:O, 8q49:O, 8q4a:O, 7qsd:O, 7qsk:O, 7qsl:O, 7qsm:O, 7qsn:O, 7qso:O, 7r41:O, 7r42:O, 7r43:O, 7r44:O, 7r45:O, 7r46:O, 7r47:O, 7r48:O, 7r4c:O, 7r4d:O, 7r4f:O, 7r4g:O, 7zd6:k, 7zdh:k, 7zdm:k, 7zdp:k, 7zeb:k, 6zka:k, 6zkb:k, 6zkc:k, 6zkd:k, 6zke:k, 6zkf:k, 6zkg:k, 6zkh:k, 6zki:k, 6zkj:k, 6zkk:k, 6zkl:k, 6zkm:k, 6zkn:k, 6zko:k, 6zkp:k, 6zkq:k, 6zkr:k, 6zks:k, 6zkt:k, 6zku:k, 6zkv:k
4 8b9z:O 368 340 0.4094 0.3560 0.3853 4.96e-66 8ba0:O, 8esw:AL, 8esz:AL
5 2ocp:A 229 201 0.1531 0.2140 0.2438 3.61e-06 2ocp:B, 2ocp:C, 2ocp:D, 2ocp:E, 2ocp:F, 2ocp:G, 2ocp:H
6 2jas:C 195 190 0.1219 0.2000 0.2053 5.69e-06 2jaq:A, 2jaq:B, 2jas:A, 2jas:B, 2jas:D, 2jas:E, 2jas:F, 2jat:A, 2jat:B
7 6ybh:D 219 212 0.1656 0.2420 0.2500 3.28e-04 1j90:A, 1j90:B, 2jcs:A, 2jcs:B, 2jj8:A, 2jj8:B, 2jj8:C, 2jj8:D, 1oe0:A, 1oe0:B, 1oe0:C, 1oe0:D, 1ot3:A, 1ot3:B, 1ot3:C, 1ot3:D, 1ot3:E, 1ot3:F, 1ot3:G, 1ot3:H, 2vp0:A, 2vp0:B, 2vp2:A, 2vp2:B, 2vp4:A, 2vp4:B, 2vp4:C, 2vp4:D, 2vp5:A, 2vp5:B, 2vp6:A, 2vp6:B, 2vp6:C, 2vp6:D, 2vp6:E, 2vp6:F, 2vp6:G, 2vp6:H, 2vp9:A, 2vp9:B, 2vp9:C, 2vp9:D, 2vp9:E, 2vp9:F, 2vp9:G, 2vp9:H, 2vpp:A, 2vpp:B, 2vqs:A, 2vqs:B, 2vqs:C, 2vqs:D, 6ybh:A, 6ybh:B, 6ybh:C, 6ybh:E, 6ybh:F, 1zm7:A, 1zm7:B, 1zm7:C, 1zm7:D, 1zmx:A, 1zmx:B, 1zmx:C, 1zmx:D, 1zmx:E, 1zmx:F, 1zmx:G, 1zmx:H
8 2no0:A 242 189 0.1313 0.1736 0.2222 0.040 2a2z:A, 2a2z:C, 2a30:A, 2a30:C, 2a7q:A, 3hp1:A, 3ipx:A, 3ipy:A, 3ipy:B, 4jlj:A, 4jlj:B, 4jlk:A, 4jlk:B, 4jlm:A, 4jlm:B, 4jln:A, 4jln:B, 4kcg:A, 4kcg:B, 3kfx:A, 3kfx:B, 4l5b:A, 4l5b:B, 3mjr:A, 3mjr:B, 3mjr:C, 5mqj:A, 5mqj:B, 5mqj:C, 5mqj:D, 5mql:A, 5mql:B, 5mql:C, 5mql:D, 5mqt:A, 5mqt:B, 5mqt:C, 5mqt:D, 2no0:B, 2no1:A, 2no1:B, 2no6:A, 2no6:B, 2no7:A, 2no7:B, 2no9:A, 2no9:B, 2noa:A, 2noa:B, 8ooj:A, 8ooj:B, 8ooj:C, 8ooj:D, 1p5z:B, 1p60:A, 1p60:B, 1p61:B, 1p62:B, 4q18:A, 4q18:B, 4q19:A, 4q19:B, 4q1a:A, 4q1a:B, 4q1b:A, 4q1b:B, 4q1c:A, 4q1c:B, 4q1d:A, 4q1d:B, 4q1e:A, 4q1e:B, 4q1f:A, 4q1f:B, 3qej:A, 3qej:B, 3qen:A, 3qen:B, 3qeo:A, 3qeo:B, 2qrn:A, 2qrn:B, 2qrn:C, 2qrn:D, 2qro:A, 2qro:B, 2qro:C, 2qro:D, 2zi3:A, 2zi3:B, 2zi4:A, 2zi5:B, 2zi6:B, 2zi9:A, 2zi9:B, 7zi1:A, 7zi2:A, 7zi3:A, 7zi5:A, 7zi6:A, 7zi7:A, 7zi8:A, 7zi9:A, 7zia:A, 7zib:A
9 4die:C 213 41 0.0563 0.0845 0.4390 0.12 4die:A, 4die:B, 4die:D
10 2ze5:A 227 60 0.0656 0.0925 0.3500 0.15 2ze6:A, 2ze7:A, 2ze8:A, 2ze8:B, 2ze8:C, 2ze8:D
11 8j5f:A 238 179 0.1344 0.1807 0.2402 0.24 8j5e:A, 8j5g:A, 8j5h:A
12 8c0v:A 823 101 0.0719 0.0279 0.2277 0.24 8c0v:C, 8c0v:E, 8c0w:B, 8c0w:D, 8c0w:F, 8u0v:A, 8u0v:C, 8u0v:E
13 7ase:J 173 58 0.0469 0.0867 0.2586 0.25 5opt:h
14 3akc:A 208 35 0.0406 0.0625 0.3714 0.93 3akd:A, 7ckj:A, 3w8n:A
15 7msk:A 421 82 0.0688 0.0523 0.2683 1.0 7msk:B
16 2r2i:A 184 79 0.0719 0.1250 0.2911 1.4
17 2cvt:A 637 57 0.0656 0.0330 0.3684 1.4
18 3rsr:A 610 43 0.0531 0.0279 0.3953 1.9
19 3s8c:A 666 43 0.0531 0.0255 0.3953 2.3 2cvu:A, 2cvv:A, 2cvw:A, 2cvx:A, 2cvy:A, 2eud:A, 3k8t:A, 3s87:A, 3s8a:A, 3s8b:A, 3tb9:A, 3tba:A, 2zlf:A, 2zlg:A, 1zzd:A
20 3mlp:A 337 65 0.0719 0.0682 0.3538 3.9 3lyr:A, 3mln:A, 3mln:B, 3mlo:A, 3mlo:B, 3mlp:B, 3mlp:E, 3mlp:F
21 5fq6:M 948 112 0.0875 0.0295 0.2500 4.0 5fq6:D, 5fq6:I, 5fq6:B, 5fq7:D, 5fq7:B, 5fq8:B, 5fq8:D
22 2h92:A 216 38 0.0437 0.0648 0.3684 4.3 2h92:B, 2h92:C
23 8rgh:C 467 64 0.0469 0.0321 0.2344 4.8
24 8h3v:S 304 102 0.0844 0.0888 0.2647 5.2 8h3v:T, 8h3v:U, 8h3v:V
25 6hxp:A 256 38 0.0437 0.0547 0.3684 7.0
26 7f5x:A 236 59 0.0531 0.0720 0.2881 7.2 7f5x:B, 7f5x:C, 7f5x:D
27 7l4a:A 223 40 0.0469 0.0673 0.3750 8.6
28 8a1h:A 516 70 0.0531 0.0329 0.2429 9.4 7ykn:A
29 5n1q:A 549 33 0.0437 0.0255 0.4242 9.4 5n1q:D, 5n28:A, 5n28:D, 5n2a:A
30 6sg9:FG 169 48 0.0500 0.0947 0.3333 9.6 6sgb:FG
31 7ole:C 427 163 0.1313 0.0984 0.2577 9.8 7ole:E

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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