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BioLiP
>protein
LRVGSRVEVIGKGHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGHGIFVRQSQIQVF

The query sequence (length=71) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2hl3:A 76 71 0.9859 0.9211 0.9859 2.09e-46 3e2u:A, 3e2u:D, 3e2u:B, 3e2u:C, 2hqh:A, 2hqh:B, 2hqh:C, 2hqh:D
2 3rdv:D 72 68 0.4648 0.4583 0.4853 1.47e-17 3rdv:A, 3rdv:B, 3rdv:C
3 2e4h:A 74 68 0.4225 0.4054 0.4412 2.29e-14
4 6fc6:A 83 68 0.3099 0.2651 0.3235 1.55e-05
5 6bpn:A 656 33 0.1690 0.0183 0.3636 0.88
6 6bpm:C 711 33 0.1690 0.0169 0.3636 0.98 6bpm:A
7 6sch:C 355 34 0.1972 0.0394 0.4118 1.1 2b83:A, 2b83:B, 2b83:C, 2b83:D, 1jqb:A, 1jqb:B, 1jqb:C, 1jqb:D, 1kev:A, 1kev:B, 1kev:C, 1kev:D, 1ped:A, 1ped:B, 1ped:C, 1ped:D, 6sch:A, 6sch:B, 6sch:D
8 3fsr:A 352 34 0.1972 0.0398 0.4118 1.4 3fsr:C, 3ftn:A, 3ftn:B, 3ftn:C, 3ftn:D
9 7k1r:A 536 35 0.1972 0.0261 0.4000 2.9 7k1r:B, 7k1r:C, 7k1r:D, 8uws:C, 8uws:D, 8uws:A, 8uws:B
10 8ero:A 364 29 0.1549 0.0302 0.3793 3.2 8ero:B, 8erp:B, 8erp:A
11 7z8i:F 279 18 0.1268 0.0323 0.5000 5.2
12 8ptk:C 375 18 0.1268 0.0240 0.5000 5.8 5adx:F, 5afu:F, 5afu:A, 5afu:B, 5afu:C, 5afu:D, 5afu:E, 5afu:G, 5afu:I, 6f1t:F, 6f1t:A, 6f1t:B, 6f1t:C, 6f1t:D, 6f1t:E, 6f1t:G, 6f1t:I, 6f1u:F, 6f1u:B, 6f1u:D, 6f38:F, 6f38:A, 6f38:B, 6f38:C, 6f38:D, 6f38:E, 6f38:G, 6f38:I, 6f3a:F, 6f3a:A, 6f3a:B, 6f3a:C, 6f3a:D, 6f3a:E, 6f3a:G, 6f3a:I, 5nw4:T, 8ptk:A, 8ptk:B, 8ptk:D, 8ptk:E, 8ptk:F, 8ptk:G, 8ptk:I, 7z8f:A, 7z8f:B, 7z8f:C, 7z8f:D, 7z8f:E, 7z8f:F, 7z8f:G, 7z8f:I, 7z8i:A, 7z8i:B, 7z8i:C, 7z8i:D, 7z8i:E, 7z8m:I, 7z8m:G, 6znl:A, 6znl:B, 6znl:C, 6znl:D, 6znl:E, 6znl:F, 6znl:G, 6znl:I, 6znm:G, 6znm:I, 6znn:G, 6znn:I, 6zno:G, 6zno:I, 6zo4:G, 6zo4:I
13 8ckb:E066 503 50 0.1972 0.0278 0.2800 6.1 8ckb:E494, 8ckb:E264, 8ckb:E265, 8ckb:E506, 8ckb:E277, 8ckb:E009, 8ckb:E021, 8ckb:E030, 8ckb:E044, 8ckb:E053, 8ckb:E062, 8ckb:E071, 8ckb:E080, 8ckb:E088, 8ckb:E097, 8ckb:E106, 8ckb:E120, 8ckb:E129, 8ckb:E138, 8ckb:E142, 8ckb:E151, 8ckb:E160, 8ckb:E173, 8ckb:E182, 8ckb:E191, 8ckb:E195, 8ckb:E204, 8ckb:E213, 8ckb:E221, 8ckb:E230, 8ckb:E236, 8ckb:E245, 8ckb:E254, 8ckb:E269, 8ckb:E281, 8ckb:E292, 8ckb:E301, 8ckb:E310, 8ckb:E314, 8ckb:E323, 8ckb:E332, 8ckb:E345, 8ckb:E354, 8ckb:E363, 8ckb:E369, 8ckb:E378, 8ckb:E386, 8ckb:E395, 8ckb:E404, 8ckb:E418, 8ckb:E427, 8ckb:E436, 8ckb:E440, 8ckb:E449, 8ckb:E458, 8ckb:E471, 8ckb:E480, 8ckb:E489, 8ckb:E491, 8ckb:E492, 8ckb:E493, 8ckb:E497, 8ckb:E499, 8ckb:E503, 8ckb:E505, 8ckb:E507, 8ckb:E508, 8ckb:E509, 8ckb:E512, 8ckb:E513, 8ckb:E515, 8ckb:E517, 8ckb:E530, 7qof:D, 7qoh:B, 7qoh:C, 7qoh:D, 7qoh:A, 7qoh:E, 7qoh:F, 7qoi:AB, 7qoi:AC, 7qoi:AD, 7qoi:AE, 7qoi:BB, 7qoi:BD, 7qoi:CB, 7qoi:CD, 7qoi:CE, 7qoi:CF, 7qoi:DB, 7qoi:DE, 7qoi:DF, 7qoi:EB, 7qoi:ED
14 8epx:D 506 25 0.1268 0.0178 0.3600 6.3 8epx:C, 8epx:A, 8epx:B
15 6pxs:A 370 60 0.2113 0.0405 0.2500 8.9 6pxs:B, 6pxs:C, 6pxs:D
16 5yln:A 348 37 0.1690 0.0345 0.3243 9.0 5yln:B, 5yln:C, 5yln:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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