Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
LRRKVQEGRLRRKQIKFEKDLRRIWLKAGLKEAPEGWQTPKIYLR

The query sequence (length=45) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7l08:A3 72 45 1.0000 0.6250 1.0000 2.36e-26 7a5f:d6, 7a5g:d6, 7a5i:d6, 7a5k:d6, 8any:A3, 8csq:3, 8csr:3, 8css:3, 8cst:3, 8csu:3, 3j9m:A3, 8k2a:Sn, 6nu2:A3, 6nu3:A3, 7og4:A3, 8oir:AD, 8ois:AD, 7p2e:3, 7pnx:3, 7pny:3, 7pnz:3, 7po0:3, 7po1:3, 7po2:3, 7po3:3, 7qi4:A3, 7qi5:A3, 7qi6:A3, 8qrk:3, 8qrl:3, 8qrm:3, 8qrn:3, 6rw4:3, 6rw5:3, 6vlz:A3, 6vmi:A3, 8xt0:Sn, 8xt2:Sn, 6zm5:A3, 6zm6:A3, 6zs9:A3, 6zsa:A3, 6zsb:A3, 6zsc:A3, 6zsd:A3, 6zse:A3, 6zsg:A3
2 7pnv:3 72 45 0.8667 0.5417 0.8667 3.46e-23 7pnt:3, 7pnu:3, 7pnw:3
3 5aj3:n 72 45 0.8222 0.5139 0.8222 1.21e-21 5aj4:An, 6gaw:An, 6gaz:An, 7nqh:An, 7nql:An, 7nsi:An, 7nsj:An, 8oin:AD, 8oip:AD, 6ydp:An, 6ydw:An
4 3jd5:n 72 45 0.8222 0.5139 0.8222 5.05e-21 6neq:n, 6nf8:n
5 7nvm:H 528 42 0.2889 0.0246 0.3095 0.90 8i1u:G, 8i1u:O, 7nvl:H, 7nvl:h, 7nvm:h, 7nvn:H, 7nvn:h, 8sfe:h, 8sfe:H, 8sff:H, 8sff:h, 8sg8:H, 8sg8:h, 8sg9:H, 8sg9:h, 8sgc:H, 8sgc:h, 8sgl:H, 8sgl:h, 8sgq:h, 8sgq:H, 8sh9:H, 8sh9:h, 8sha:H, 8sha:h, 8shd:H, 8shd:h, 8she:H, 8she:h, 8shf:H, 8shf:h, 8shg:H, 8shg:h, 8shl:H, 8shl:h, 8shn:H, 8shn:h, 8sho:H, 8sho:h, 8shp:H, 8shp:h, 8shq:H, 8shq:h, 8sht:H, 8sht:h, 7trg:C, 7ttn:C, 7ttt:C, 7tub:C, 7x0s:H, 7x0s:O, 7x0v:H, 7x0v:O, 7x3j:H, 7x3j:h, 7x3u:h, 7x3u:H
6 8v46:A 412 31 0.2889 0.0316 0.4194 1.8 8ux9:B, 8ux9:C, 8v46:B, 8v47:A, 8v47:B, 8v47:C, 8v48:A, 8v48:B, 8v48:C, 8v48:F, 8v49:A, 8v49:B
7 6m5x:O 334 22 0.2222 0.0299 0.4545 4.0 6m5x:R, 6m5x:P, 6m5x:Q
8 8art:B 393 20 0.2000 0.0229 0.4500 6.6 8art:A
9 3uyy:B 337 14 0.1778 0.0237 0.5714 6.6 3uyy:A, 3uzb:A, 3uzb:B, 3uzb:C, 3uzb:D, 3uzo:A, 3uzo:B
10 7sx3:A 1386 21 0.2222 0.0072 0.4762 6.6 7sx4:A
11 3a9v:A 528 24 0.1778 0.0152 0.3333 7.8 3ni2:A
12 4bf7:A 335 42 0.2444 0.0328 0.2619 8.9
13 4a37:B 376 19 0.1778 0.0213 0.4211 9.1 4a37:A, 4a38:A, 4a38:B, 4a39:A, 4a39:B

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218