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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
LRQVIPIPSPPAKYLLPEVTVLDYGKKCVVIDLDETLVHSSFKPISNADFIVPVEIDGTIHQVYVLKRPHVDEFLQRMGQ
LFECVLFTASLAKYADPVADLLDRWGVFRARLFRESCVFHRGNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVPVQS
WFDDMTDTELLDLIPFFEGLSRED

The query sequence (length=184) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2hhl:C 184 184 1.0000 1.0000 1.0000 1.39e-135 2hhl:A, 2hhl:D
2 1t9z:A 181 172 0.7663 0.7790 0.8198 5.95e-107 6du2:A, 6du2:B, 6du3:A, 6du3:B, 2ghq:A, 2ghq:B, 2ght:A, 2ght:B, 3l0b:A, 3l0c:A, 3l0c:B, 3l0y:A, 3l0y:B, 3pgl:A, 3pgl:B, 1ta0:A, 4ygy:A, 4ygy:B, 4yh1:A, 4yh1:B
3 2q5e:A 181 167 0.7717 0.7845 0.8503 3.22e-103 2q5e:B, 2q5e:C, 2q5e:D, 2q5e:E, 2q5e:F, 2q5e:G, 2q5e:H
4 8ujm:B 237 179 0.4185 0.3249 0.4302 3.39e-43 8ujm:A
5 4qqf:F 191 157 0.3315 0.3194 0.3885 3.01e-29 3qle:A
6 3ef1:A 372 104 0.1413 0.0699 0.2500 5.16e-05 3ef0:A, 4xpz:A, 4xq0:A
7 3shq:A 299 191 0.2500 0.1538 0.2408 0.039
8 6yjb:A 309 94 0.1304 0.0777 0.2553 0.19 6ykf:A, 6ymg:A, 6ymg:B
9 2y3a:A 976 47 0.0870 0.0164 0.3404 3.4
10 3o8o:E 752 24 0.0598 0.0146 0.4583 4.6 3o8o:A, 3o8o:C, 3o8o:G
11 7dhw:A 726 63 0.1304 0.0331 0.3810 6.7
12 1mzp:A 217 42 0.0815 0.0691 0.3571 7.8 8hku:AL1P, 8hky:AL1P, 8hkz:AL1P, 8hl1:AL1P, 8hl2:AL1P, 8hl3:AL1P, 8hl4:AL1P, 8hl5:AL1P, 4v49:B5, 4v4a:B5, 4v4g:B7, 4v4g:D7, 4v4g:F7, 4v4g:H7, 4v4g:J7, 4v65:BZ, 4v66:BZ
13 4yf9:C 575 47 0.0870 0.0278 0.3404 7.9 4yf9:F, 4yf9:I, 4yf9:L, 4yfa:C, 4yfa:F, 4yfa:I, 4yfa:L, 4yfb:C, 4yfb:F, 4yfb:I, 4yfb:L

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218