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BioLiP
>protein
LRPSDKFFELLGYKPHHVQLAIHRSTAKRRVACLGRQSGKSEAASVEAVFELFARPGSQGWIIAPTYDQAEIIFGRVVEK
VERLAEVFPATEVQLQRRRLRLLVHHYDRPVNAPGAKRVATSEFRGKSADRPDNLRGATLDFVILDEAAMIPFSVWSEAI
EPTLSVRDGWALIISTPKGLNWFYEFFLMGWRGGLKEGIPNSGINQTHPDFESFHAASWDVWPERREWYMERRLYIPDLE
FRQEYGAEFVSH

The query sequence (length=252) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4znl:B 254 252 1.0000 0.9921 1.0000 0.0 7ks4:B, 4znl:A, 4znl:C
2 2o0j:A 360 232 0.2302 0.1611 0.2500 8.74e-06 2o0h:A
3 7yzi:A 378 88 0.1032 0.0688 0.2955 0.60 4p2x:A, 7yz9:A, 7yzi:B, 7yzk:A, 7yzk:B
4 5o5l:A 224 61 0.0675 0.0759 0.2787 2.1 5o5k:A, 5o5k:B, 5o5k:D, 5o5k:C, 5o5k:E, 5o5k:F, 5o5k:I, 5o5k:J, 5o5k:H, 5o5k:G, 5o5k:K, 5o5l:B, 5o5l:C, 5o5l:D, 5o5l:E, 5o5l:F, 5o5l:G, 5o5l:H, 5o5l:I, 5o5l:J, 5o5l:K
5 7r7e:A 567 107 0.1151 0.0511 0.2710 2.3 7r7e:B, 7r7f:A, 7r7f:B, 7r7g:A, 7r7g:B
6 1shz:D 327 33 0.0476 0.0367 0.3636 5.1 1shz:A
7 2z86:C 603 117 0.1151 0.0481 0.2479 5.9 2z86:A, 2z86:B, 2z86:D, 2z87:A, 2z87:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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