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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
LRLEQIYQDVILDHYKHPQHRGLREPFGAQVYHVNPICGDEVTLRVALSEDGTRVTDVSYDGQGCSISQAATSVLTEQVI
GQRVPRALNIVDAFTEMVSSRGTVPGDEDVLGDGVAFAGVAKYPARVKCALLGWMAFKDALAQASEAFEE

The query sequence (length=150) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8odq:A 150 150 1.0000 1.0000 1.0000 2.07e-110 8odq:C
2 2qq4:A 138 139 0.3933 0.4275 0.4245 4.95e-33 2qq4:B, 2qq4:C, 2qq4:D, 2qq4:E, 2qq4:F, 2qq4:G, 2qq4:H, 2qq4:I, 2qq4:J
3 1su0:B 136 139 0.3733 0.4118 0.4029 1.23e-31
4 2azh:A 147 142 0.3667 0.3741 0.3873 4.38e-31 6jzv:A, 6jzv:B, 6jzv:C, 6jzv:D, 6jzw:A, 6jzw:B, 6jzw:C, 6jzw:D, 1xjs:A, 5xt5:D, 5xt5:C, 5xt6:D, 5xt6:C
5 6a6f:A 136 136 0.3533 0.3897 0.3897 1.86e-25 6a6f:B, 6a6g:C, 6a6g:D
6 4eb5:C 138 91 0.1867 0.2029 0.3077 5.78e-10 4eb5:D, 4eb7:C
7 2z7e:B 140 141 0.2333 0.2500 0.2482 1.83e-09
8 1r9p:A 134 139 0.2200 0.2463 0.2374 1.24e-06
9 7cnv:A 132 85 0.1267 0.1439 0.2235 2.14e-05 7c8m:A, 7c8m:C, 7c8n:A, 7c8o:D, 7c8o:B, 7cnv:B, 7cnv:C, 7cnv:D, 7cnv:E, 7cnv:F
10 5g4i:A 423 56 0.1267 0.0449 0.3393 0.30 5g4i:B, 5g4j:A, 5g4j:B
11 5ij6:A 322 54 0.1067 0.0497 0.2963 0.62
12 4jzt:A 158 46 0.1133 0.1076 0.3696 1.9 4jzu:A, 4jzv:A, 4jzv:B
13 8p5d:SD0 216 37 0.0867 0.0602 0.3514 5.3 8p60:SD0, 8p60:RD0, 7qca:SD0
14 2lev:A 57 48 0.1067 0.2807 0.3333 5.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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