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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
LRLADFGFTDGINEIIAITENEDGSWNAAPIGIIVEDSSSDTAKAKLYRNRTRANLERSGVLFANVTDDALVFAVSSFGN
LNDDWYASPNPPIIKGAMAWCRFEAEMRSGVAHLKLTDGEIIEKRVRAINRGLSAVIEALVHATRYVAIKSDERRKELLE
RIHYYREIVQKCGSEREKRAFEIIMEKIGEG

The query sequence (length=191) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2iml:D 197 191 1.0000 0.9695 1.0000 2.03e-140 2iml:A
2 2nr4:A 191 199 0.3508 0.3508 0.3367 2.40e-22 2nr4:B
3 2ptf:A 200 192 0.3141 0.3000 0.3125 1.45e-13 2ptf:B
4 6krt:A 433 87 0.1204 0.0531 0.2644 0.34 6krt:B
5 3meq:A 341 35 0.0785 0.0440 0.4286 0.51 3meq:B, 3meq:C, 3meq:D
6 4f07:F 155 55 0.0995 0.1226 0.3455 1.5 4f07:A, 4f07:B, 4f07:C, 4f07:G, 4f07:D, 4f07:E, 4f07:H, 4f07:I, 4f07:J, 4f07:L, 4f07:K
7 2hxv:A 349 78 0.1099 0.0602 0.2692 1.9
8 8ibw:C 922 86 0.1309 0.0271 0.2907 4.3 8gh6:A, 8ibx:C, 8iby:C, 8ibz:C
9 7q4l:A 227 59 0.0785 0.0661 0.2542 5.2
10 7btj:C 435 87 0.1099 0.0483 0.2414 5.4 7bq6:A, 7btj:A, 7btj:B, 7btj:D, 7buz:A, 7buz:B, 7bvi:A, 7bvi:B, 7bvi:C, 7bvi:D, 5jci:A, 5jck:A, 5jcl:A, 5jcl:B, 5jcm:A, 5jcm:B, 5jcn:A, 5jcn:B
11 4ifu:A 330 40 0.0733 0.0424 0.3500 8.8 4ifw:A, 4ifx:A, 4ifz:A, 4ig1:A, 7mgt:A, 4xdr:A, 4xdt:A, 4xdu:A
12 7k5b:B 4524 20 0.0628 0.0027 0.6000 9.6 8bx8:B, 7k58:B, 7kek:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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