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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
LRANLLVLLTVVAVVAGVALGLGVSGAGGALALGPERLSAFVFPGELLLRLLRMIILPLVVCSLIGGAASLDPGALGRLG
AWALLFFLVTTLLASALGVGLALALQPGAASKEVLDSFLDLARNIFPSNLVSAAFRSYSTTYEERKVPVGQEVEGMNILG
LVVFAIVFGVALRKLGPEGELLIRFFNSFNEATMVLVSWIMWYAPVGIMFLVAGKIVEMEDVGLLFARLGKYILCCLLGH
AIHGLLVLPLIYFLFTRKNPYRFLWGIVTPLATAFGTSSSSATLPLMMKCVEENNGVAKHISRFILPIGATVNMDGAALF
QCVAAVFIAQLSQQSLDFVKIITILVTATASSVGAAGIPAGGVLTLAIILEAVNLPVDHISLILAVDWLVDRSCTVLNVE
GDALGAGLLQNYVDRT

The query sequence (length=416) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8qrr:B 420 419 0.9952 0.9857 0.9881 0.0 8oud:A, 8oud:B, 8oud:C, 8qro:A, 8qro:B, 8qro:C, 8qrp:B, 8qrq:B, 8qrs:B, 8qru:B
2 6mpb:B 446 440 0.9976 0.9305 0.9432 0.0 7bcq:A, 7bcq:B, 7bcq:C, 7bcs:A, 7bcs:B, 7bcs:C, 6gct:A, 6gct:B, 6gct:C, 6mpb:C, 6mpb:A, 8ouh:A, 8ouh:B, 8ouj:A, 8ouj:B
3 8oui:C 429 423 0.8798 0.8531 0.8652 0.0 8oui:B
4 7awm:A 412 411 0.5865 0.5922 0.5937 5.36e-158 7awl:A, 7awn:A, 7awp:A, 7awq:A, 5llm:A, 5llu:A, 5lm4:A, 5mju:A
5 8cv2:A 433 424 0.4880 0.4688 0.4788 1.94e-129 8ctc:A, 8ctc:B, 8ctc:C, 8ctd:A, 8cua:A, 8cua:B, 8cua:C, 8cv2:B, 8cv2:C, 8cv3:A, 7nsg:A, 7nsg:B, 7nsg:C, 6s3q:A, 6s3q:B, 6s3q:C, 6x2z:A, 6x3e:A
6 7xr4:A 425 416 0.4712 0.4612 0.4712 2.69e-124 7vr7:A, 7vr8:A, 7xr4:B, 7xr4:C, 7xr6:A, 7xr6:B, 7xr6:C
7 6x15:A 419 402 0.3029 0.3007 0.3134 7.02e-48 6bat:A, 6bat:B, 6bat:C, 6bau:A, 6bau:B, 6bau:C, 6bav:A, 6bav:B, 6bav:C, 6bmi:A, 6bmi:B, 6bmi:C, 5cfy:A, 5cfy:B, 5cfy:C, 5cfy:D, 5cfy:E, 5cfy:F, 6ctf:A, 6ctf:B, 6ctf:C, 4izm:A, 4izm:B, 4izm:C, 3kbc:A, 3kbc:B, 3kbc:C, 2nwl:A, 2nwl:B, 2nwl:C, 2nww:A, 2nww:B, 2nww:C, 2nwx:A, 2nwx:B, 2nwx:C, 4oyf:A, 4oyf:B, 4oyf:C, 4oyf:D, 4oyf:E, 4oyf:F, 7rcp:A, 7rcp:B, 7rcp:C, 7ug0:A, 7ugd:A, 7ugj:A, 7ugv:A, 7ugx:A, 7uh3:A, 7uh6:A, 6uwf:A, 6uwl:A, 3v8f:A, 3v8f:B, 3v8f:C, 3v8g:A, 3v8g:B, 3v8g:C, 3v8g:D, 3v8g:E, 3v8g:F, 6v8g:A, 6v8g:B, 6v8g:C, 6wyj:A, 6wyk:A, 6wyl:A, 6wyl:B, 6wyl:C, 6wzb:A, 6wzb:B, 6wzb:C, 6x01:A, 6x01:B, 6x01:C, 6x12:A, 6x13:A, 6x14:A, 6x14:B, 6x14:C, 6x15:B, 6x15:C, 6x16:B, 6x16:A, 6x16:C, 6x17:A, 6x17:B, 6x17:C, 4x2s:A, 4x2s:B, 4x2s:C
8 5e9s:A 427 382 0.3005 0.2927 0.3272 1.04e-47 8afa:A, 8afa:B, 8afa:C, 5e9s:B, 5e9s:C, 7ngh:A, 7ngh:B, 7ngh:C, 6r7r:A, 6r7r:B, 6r7r:C, 6xwn:B, 6xwn:C, 6xwo:C, 6xwp:B, 6xwp:C, 6xwq:A, 6xwq:B, 6xwq:C, 6zgb:A, 6zgb:B, 6zgb:C, 6zl4:A, 6zl4:B, 6zl4:C, 6zlh:A, 6zlh:B, 6zlh:C
9 2sqc:A 623 29 0.0337 0.0225 0.4828 0.36 1gsz:A, 1gsz:B, 1gsz:C, 1h35:A, 1h35:B, 1h35:C, 1h36:A, 1h36:B, 1h36:C, 1h37:A, 1h37:B, 1h37:C, 1h39:A, 1h39:B, 1h39:C, 1h3a:A, 1h3a:B, 1h3a:C, 1h3b:A, 1h3b:B, 1h3b:C, 1h3c:A, 1h3c:B, 1h3c:C, 1o6h:A, 1o6h:B, 1o6h:C, 1o6q:A, 1o6q:B, 1o6q:C, 1o6r:A, 1o6r:B, 1o6r:C, 1o79:A, 1o79:B, 1o79:C, 2sqc:B, 1ump:A, 1ump:B, 1ump:C
10 1wnb:A 474 65 0.0433 0.0380 0.2769 6.6 1wnb:B, 1wnb:C, 1wnb:D, 1wnd:A, 1wnd:B, 1wnd:C, 1wnd:D
11 5k7x:A 337 116 0.0793 0.0979 0.2845 9.9 5k7x:B, 5k7x:C, 5k7x:D, 5k7x:E, 5k7x:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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