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BioLiP
>protein
LQYGPLAFVLGERTTRKLTETSKVITVDGNICSGKGRLAREIAEKLGLRHFPEAGIHYADSTTGDGKPLDVQLSGNCSLE
KFYDDPKSNDGNSYRLQSWLYASRLLQYADALEHLLSTGQGVVLERSIYSDFVFLEAMYRQGFIRKQCVEHYNEVKKVTA
CEYLPPHVVVYVDVPVPEIQSRIQKKGNPHEMKITAAYLQDIENAYKKTFLPEMSEKCEVLQYSAREAEDAEKVVEDIEY
LKCDKGPWPDQDDRTFHRLRMLVQNKLEVLNYTTIPVYLPEITIGAHQSDRVFQKFTELPGRKYSPGYNEDVGDKWIWLK

The query sequence (length=320) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8ud1:1O 320 320 1.0000 1.0000 1.0000 0.0 8ueo:1O, 8uep:1O, 8ueq:1O, 8uer:1O, 8ues:1O, 8uet:1O, 8ueu:1O, 8uev:1O, 8uew:1O, 8uex:1O, 8uey:1O, 8uez:1O, 8ugh:1O, 8ugi:1O, 8ugj:1O, 8ugn:1O, 8ugn:5O, 8ugr:1O, 8ugr:5O, 7v2c:w, 7v2d:w, 7v2e:w, 7v2f:w, 7v2h:w, 7v2k:w, 7v2r:w, 7v30:w, 7v31:w, 7v32:w, 7v33:w, 7v3m:w, 7vbl:w, 7vbp:w, 7vc0:w, 7vwl:w, 7vxs:w, 7vy1:w, 7vy9:w, 7vye:w, 7vyg:w, 7vyi:w, 7vys:w, 7vz8:w, 7vzv:w, 7vzw:w, 7w00:w, 7w0h:w, 7w0r:w, 7w0y:w, 7w1o:w, 7w1p:w, 7w1t:w, 7w1u:w, 7w1v:w, 7w1z:w, 7w20:w, 7w2k:w, 7w2l:w, 7w2r:w, 7w2u:w, 7w2y:w, 7w31:w, 7w32:w, 7w35:w, 7w4c:w, 7w4d:w, 7w4e:w, 7w4f:w, 7w4g:w, 7w4j:w, 7w4k:w, 7w4l:w, 7w4m:w, 7w4n:w, 7w4q:w
2 8q0a:O 320 320 0.8781 0.8781 0.8781 0.0 8q0f:O, 8q0j:O, 8q0m:O, 8q0o:O, 8q0q:O, 8q1p:O, 8q1u:O, 8q1y:O, 8q25:O, 8q45:O, 8q46:O, 8q47:O, 8q48:O, 8q49:O, 8q4a:O, 7qsd:O, 7qsk:O, 7qsl:O, 7qsm:O, 7qsn:O, 7qso:O, 7r41:O, 7r42:O, 7r43:O, 7r44:O, 7r45:O, 7r46:O, 7r47:O, 7r48:O, 7r4c:O, 7r4d:O, 7r4f:O, 7r4g:O, 7zd6:k, 7zdh:k, 7zdm:k, 7zdp:k, 7zeb:k, 6zka:k, 6zkb:k, 6zkc:k, 6zkd:k, 6zke:k, 6zkf:k, 6zkg:k, 6zkh:k, 6zki:k, 6zkj:k, 6zkk:k, 6zkl:k, 6zkm:k, 6zkn:k, 6zko:k, 6zkp:k, 6zkq:k, 6zkr:k, 6zks:k, 6zkt:k, 6zku:k, 6zkv:k
3 7ak5:O 320 320 0.7875 0.7875 0.7875 0.0 7ak6:O, 7b93:O, 8c2s:O, 8ca3:O, 8ca5:O, 6g2j:O, 6g72:O, 8iao:O, 8iaq:O, 8ib4:O, 8ib6:O, 8ib9:O, 8ibb:O, 8ibd:O, 8ibf:O, 8ic2:O, 8ic4:O, 8olt:O, 8om1:O, 7psa:O, 8pw5:O1, 8pw6:O1, 8pw7:O1, 8rgp:O, 8rgq:O, 8rgr:O, 8rgt:O, 6zr2:O, 6ztq:O
4 8b9z:O 368 335 0.3656 0.3179 0.3493 9.21e-60 8ba0:O, 8esw:AL, 8esz:AL
5 2jas:C 195 190 0.1281 0.2103 0.2158 6.86e-06 2jaq:A, 2jaq:B, 2jas:A, 2jas:B, 2jas:D, 2jas:E, 2jas:F, 2jat:A, 2jat:B
6 6ybh:D 219 212 0.1656 0.2420 0.2500 1.80e-05 1j90:A, 1j90:B, 2jcs:A, 2jcs:B, 2jj8:A, 2jj8:B, 2jj8:C, 2jj8:D, 1oe0:A, 1oe0:B, 1oe0:C, 1oe0:D, 1ot3:A, 1ot3:B, 1ot3:C, 1ot3:D, 1ot3:E, 1ot3:F, 1ot3:G, 1ot3:H, 2vp0:A, 2vp0:B, 2vp2:A, 2vp2:B, 2vp4:A, 2vp4:B, 2vp4:C, 2vp4:D, 2vp5:A, 2vp5:B, 2vp6:A, 2vp6:B, 2vp6:C, 2vp6:D, 2vp6:E, 2vp6:F, 2vp6:G, 2vp6:H, 2vp9:A, 2vp9:B, 2vp9:C, 2vp9:D, 2vp9:E, 2vp9:F, 2vp9:G, 2vp9:H, 2vpp:A, 2vpp:B, 2vqs:A, 2vqs:B, 2vqs:C, 2vqs:D, 6ybh:A, 6ybh:B, 6ybh:C, 6ybh:E, 6ybh:F, 1zm7:A, 1zm7:B, 1zm7:C, 1zm7:D, 1zmx:A, 1zmx:B, 1zmx:C, 1zmx:D, 1zmx:E, 1zmx:F, 1zmx:G, 1zmx:H
7 2no0:A 242 199 0.1406 0.1860 0.2261 0.006 2a2z:A, 2a2z:C, 2a30:A, 2a30:C, 2a7q:A, 3hp1:A, 3ipx:A, 3ipy:A, 3ipy:B, 4jlj:A, 4jlj:B, 4jlk:A, 4jlk:B, 4jlm:A, 4jlm:B, 4jln:A, 4jln:B, 4kcg:A, 4kcg:B, 3kfx:A, 3kfx:B, 4l5b:A, 4l5b:B, 3mjr:A, 3mjr:B, 3mjr:C, 5mqj:A, 5mqj:B, 5mqj:C, 5mqj:D, 5mql:A, 5mql:B, 5mql:C, 5mql:D, 5mqt:A, 5mqt:B, 5mqt:C, 5mqt:D, 2no0:B, 2no1:A, 2no1:B, 2no6:A, 2no6:B, 2no7:A, 2no7:B, 2no9:A, 2no9:B, 2noa:A, 2noa:B, 8ooj:A, 8ooj:B, 8ooj:C, 8ooj:D, 1p5z:B, 1p60:A, 1p60:B, 1p61:B, 1p62:B, 4q18:A, 4q18:B, 4q19:A, 4q19:B, 4q1a:A, 4q1a:B, 4q1b:A, 4q1b:B, 4q1c:A, 4q1c:B, 4q1d:A, 4q1d:B, 4q1e:A, 4q1e:B, 4q1f:A, 4q1f:B, 3qej:A, 3qej:B, 3qen:A, 3qen:B, 3qeo:A, 3qeo:B, 2qrn:A, 2qrn:B, 2qrn:C, 2qrn:D, 2qro:A, 2qro:B, 2qro:C, 2qro:D, 2zi3:A, 2zi3:B, 2zi4:A, 2zi5:B, 2zi6:B, 2zi9:A, 2zi9:B, 7zi1:A, 7zi2:A, 7zi3:A, 7zi5:A, 7zi6:A, 7zi7:A, 7zi8:A, 7zi9:A, 7zia:A, 7zib:A
8 6b2w:A 333 86 0.0750 0.0721 0.2791 0.11 6b2w:B
9 8j5f:A 238 91 0.0781 0.1050 0.2747 0.60 8j5e:A, 8j5g:A, 8j5h:A
10 7ase:J 173 58 0.0469 0.0867 0.2586 1.1 5opt:h
11 3l43:B 246 78 0.0625 0.0813 0.2564 1.2 3l43:A, 3l43:C, 3l43:D
12 3akc:A 208 35 0.0406 0.0625 0.3714 1.8 3akd:A, 7ckj:A, 3w8n:A
13 2r2i:A 184 79 0.0719 0.1250 0.2911 2.1
14 4die:C 213 37 0.0437 0.0657 0.3784 4.3 4die:A, 4die:B, 4die:D
15 2fsn:B 311 39 0.0500 0.0514 0.4103 6.0 2fsn:A
16 2f17:A 255 79 0.0656 0.0824 0.2658 6.9 2f17:B, 1ig3:A, 1ig3:B
17 7u5d:A 630 70 0.0563 0.0286 0.2571 7.4
18 6sg9:FG 169 48 0.0500 0.0947 0.3333 8.9 6sgb:FG
19 2ag5:A 246 20 0.0312 0.0407 0.5000 9.2 2ag5:B, 2ag5:C, 2ag5:D
20 8h2i:cX 401 40 0.0469 0.0374 0.3750 9.3 8h2i:cZ, 8h2i:dd, 8h2i:dk, 8h2i:dl

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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