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BioLiP
>protein
LQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFNDLCDFMVSGPIISIVYEGTD
AISKIRRLQGNILTPGTIRGDLANDIGENLIHASDSEDSAVDEISIWFP

The query sequence (length=129) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3ejm:A 134 133 0.9612 0.9254 0.9323 2.99e-87 3b6b:A, 3b6b:B, 3b6b:C, 3b6b:D, 3b6b:E, 3b6b:F, 2b8q:A, 2b8q:B, 2b8q:C, 2b8q:D, 2b8q:E, 2b8q:F, 3ddi:A, 3ddi:B, 3dkd:A, 3dkd:B, 3ee3:A, 3ee3:B, 3ee3:C, 3ee3:D, 3ee3:E, 3ee3:F, 3eic:A, 3eic:B, 3eic:C, 3eic:D, 3eic:E, 3eic:F, 3ejm:B, 3em1:A, 3em1:B, 3emt:A, 3emt:B, 3ena:A, 3ena:B, 3etm:A, 3etm:B, 3evm:A, 3evm:B, 3evo:A, 3evo:B, 3evw:A, 3evw:B, 3evw:C, 3evw:D, 3evw:E, 3evw:F, 3fbb:A, 3fbb:B, 3fbb:C, 3fbb:D, 3fbb:E, 3fbb:F, 3fbc:A, 3fbc:B, 3fbc:C, 3fbc:D, 3fbc:E, 3fbc:F, 3fbe:A, 3fbe:B, 3fbe:C, 3fbe:D, 3fbe:E, 3fbe:F, 3fbf:A, 3fbf:B, 3fbf:C, 3fbf:D, 3fbf:E, 3fbf:F, 3fc9:A, 3fc9:B, 3fc9:C, 3fc9:D, 3fc9:E, 3fc9:F, 3fcw:A, 3fcw:B, 3fcw:C, 3fcw:D, 3fcw:E, 3fcw:F, 3g2x:A, 3g2x:B, 3g2x:C, 3g2x:D, 3g2x:E, 3g2x:F, 3gp9:A, 3gp9:B, 3gp9:C, 3gp9:D, 3gp9:E, 3gp9:F, 3gpa:A, 3gpa:C, 3gpa:E, 3gpa:B, 3gpa:D, 3gpa:F
2 3q86:A 149 132 0.4419 0.3826 0.4318 9.73e-37 3q86:B, 3q89:B, 3q89:E, 3q8u:A, 3q8u:B, 3q8u:C, 3q8u:D, 3q8u:E, 3q8u:F, 3q8v:A, 3q8v:B, 3q8v:D, 3q8y:A, 3q8y:B, 3q8y:C, 3q8y:D, 3q8y:E, 3q8y:F, 3q8y:G, 3q8y:H
3 5u2i:B 151 131 0.4186 0.3576 0.4122 1.96e-36 5u2i:D
4 1s59:A 153 132 0.4109 0.3464 0.4015 2.03e-36 1s59:C
5 2az1:A 155 133 0.4341 0.3613 0.4211 6.27e-36 2az1:C, 2az1:D, 2az3:A, 2az3:B, 2az3:F, 2az3:C, 2az3:D, 2az3:E, 2az3:G, 2az3:H, 2az3:I
6 5bxi:B 153 132 0.4186 0.3529 0.4091 6.53e-36 5bxi:A, 5bxi:C, 5bxi:I
7 1wkk:A 137 132 0.4186 0.3942 0.4091 1.46e-35 1wkl:A, 1wkl:B
8 4uof:A 151 131 0.4031 0.3444 0.3969 3.16e-35 4uof:B, 4uof:C, 4uog:A, 4uog:B, 4uog:C, 4uoh:B, 4uoh:C
9 8qvz:C 155 131 0.4264 0.3548 0.4198 6.88e-35 8qvz:A, 8qvz:B, 8qvz:D, 8qvz:E, 8qvz:F, 8qw0:A, 8qw0:B, 8qw0:C, 8qw0:D, 8qw0:E, 8qw0:F, 8qw0:G, 8qw0:H, 8qw0:I, 8qw0:J, 8qw0:K, 8qw0:L, 8qw1:A, 8qw1:B, 8qw1:C, 8qw1:D, 8qw1:E, 8qw1:F, 8qw2:A, 8qw2:B, 8qw2:C, 8qw2:D, 8qw2:E, 8qw2:F, 8qw3:A, 8qw3:B, 8qw3:C, 8qw3:D, 8qw3:E, 8qw3:F, 1zs6:A, 1zs6:B, 1zs6:D
10 6xpw:C 158 131 0.4419 0.3608 0.4351 8.83e-35 6xp7:A, 6xp7:B, 6xp7:C, 6xps:A, 6xps:B, 6xps:C, 6xpt:A, 6xpt:B, 6xpt:C, 6xpt:E, 6xpt:G, 6xpt:H, 6xpu:A, 6xpu:B, 6xpu:C, 6xpv:A, 6xpv:B, 6xpv:C, 6xpv:E, 6xpv:G, 6xpv:H, 6xpw:A, 6xpw:B, 6xpw:E, 6xpw:G, 6xpw:H
11 4cp5:A 151 131 0.4341 0.3709 0.4275 6.67e-34 1b4s:A, 1b4s:B, 1b4s:C, 1b99:A, 1b99:C, 1b99:D, 1b99:E, 2bef:A, 2bef:B, 2bef:C, 1bux:A, 1bux:B, 1bux:C, 4cp5:B, 4cp5:C, 4cp5:D, 4cp5:E, 4cp5:F, 1f3f:A, 1f3f:B, 1f3f:C, 1f6t:A, 1f6t:B, 1f6t:C, 3fkb:A, 3fkb:B, 3fkb:C, 3fkb:D, 3fkb:E, 3fkb:F, 1hiy:A, 1hiy:B, 1hiy:C, 1kdn:A, 1kdn:B, 1kdn:C, 1lwx:A, 1lwx:B, 1lwx:C, 1mn7:A, 1mn7:B, 1mn9:A, 1mn9:B, 1mn9:C, 1ndc:A, 1ndp:A, 1ndp:B, 1pae:X, 1s5z:A
12 2dya:B 155 135 0.4729 0.3935 0.4519 1.01e-33 2dxd:A, 2dxd:B, 2dxe:A, 2dxf:A, 2dy9:A, 2dya:A
13 7kpf:A 152 132 0.4341 0.3684 0.4242 1.73e-33 3bbb:B, 3bbb:C, 3bbb:E, 3bbb:F, 3bbf:A, 3bbf:B, 3bbf:C, 3bbf:D, 3bbf:E, 3bbf:F, 7kpf:B, 7kpf:C, 1nue:A, 1nue:B, 1nue:C, 1nue:D, 1nue:E, 1nue:F, 8pie:A, 8pie:B, 8pie:C, 8pie:D, 8pie:E, 8pie:F, 8pyw:A, 8pyw:B, 8pyw:C, 8pyw:D, 8pyw:E, 8pyw:F
14 8oov:B 157 131 0.4109 0.3376 0.4046 9.04e-33 1be4:A, 1be4:B, 1be4:C, 1bhn:A, 1bhn:B, 1bhn:C, 1bhn:D, 1bhn:E, 1bhn:F, 4eno:A, 4eno:B, 2hvd:A, 2hvd:B, 2hvd:C, 2hve:A, 2hve:B, 2hve:C, 8oov:A, 8oov:C, 1ucn:A, 1ucn:B, 1ucn:C, 5ui4:A, 5ui4:B, 5ui4:C, 5ui4:D, 5ui4:E, 5ui4:F, 7zl8:A, 7zl8:B, 7zl8:C, 7zl8:D, 7zl8:E, 7zl8:F, 7zl8:G, 7zl8:H, 7zl8:I, 7zl8:J, 7zl8:K, 7zl8:L, 7zlw:A, 7zlw:B, 7zlw:C, 7zlw:D, 7zlw:F, 7ztk:A, 7ztk:B, 7ztk:C, 7ztk:D, 7ztk:E, 7ztk:F
15 5kk8:A 149 131 0.3798 0.3289 0.3740 8.46e-32 5kk8:B
16 3ngs:A 151 131 0.4031 0.3444 0.3969 9.89e-31 4kpc:A, 4kpc:B, 3ngs:C, 3ngt:A, 3ngt:B, 3ngt:C, 3ngt:D, 3ngt:E, 3ngt:F, 3ngt:G, 3ngt:H, 3ngt:I, 3ngt:J, 3ngt:K, 3ngt:M, 3ngt:N, 3ngu:A, 3ngu:B
17 4fkx:A 153 131 0.3953 0.3333 0.3893 1.63e-29 4f4a:A, 4f4a:B, 4f4a:C, 4fkx:B, 4fkx:C, 4fky:A, 4fky:B, 4fky:C
18 4ek2:A 142 133 0.4186 0.3803 0.4060 5.60e-29 4hr2:A, 4hr2:B
19 4s0m:D 143 134 0.4419 0.3986 0.4254 3.69e-28 5yol:E, 5yol:H
20 7kpf:F 135 132 0.3953 0.3778 0.3864 6.15e-27
21 1nhk:R 144 132 0.3643 0.3264 0.3561 5.31e-24 1nhk:L, 1nlk:R, 1nlk:L
22 4dz6:A 168 148 0.4031 0.3095 0.3514 5.28e-21 4dz6:B, 4dz6:C, 4dz6:D, 4dz6:E, 4dz6:F
23 2rag:A 369 54 0.1550 0.0542 0.3704 0.87 2rag:B, 2rag:C, 2rag:D
24 2ji6:A 559 25 0.0853 0.0197 0.4400 1.9 2c31:A, 2c31:B, 2ji6:B, 2ji7:A, 2ji7:B, 2ji8:A, 2ji8:B, 2ji9:A, 2ji9:B, 2jib:A, 2jib:B
25 6sms:A 724 39 0.1163 0.0207 0.3846 2.0
26 3jsz:A 520 51 0.1473 0.0365 0.3725 2.1 3jt1:A, 2wzg:A
27 7ryo:A 277 58 0.1318 0.0614 0.2931 2.1 5j1a:A, 7koz:A, 7kp0:A, 7kp1:A, 6nux:A, 1onq:A, 1onq:C, 7ryn:A, 7sh4:A, 4x6c:A, 4x6c:C, 4x6e:A, 4x6f:A, 1xz0:A, 1xz0:C
28 8chs:A 718 23 0.0853 0.0153 0.4783 2.6 8cd0:A
29 8ccy:A 754 23 0.0853 0.0146 0.4783 2.7 1nst:A
30 7bjt:A 727 22 0.0775 0.0138 0.4545 2.8 7bjt:B, 7bm6:A, 7bm6:B
31 1s5j:A 727 32 0.0930 0.0165 0.3750 3.7
32 6rxu:UJ 1090 53 0.1240 0.0147 0.3019 4.4 5oql:G, 6rxt:UJ, 6rxv:UJ, 6rxy:UJ, 6rxz:UJ
33 8bip:B 796 34 0.0930 0.0151 0.3529 6.4 8bjq:B, 8bjq:D
34 4glw:B 281 78 0.1705 0.0783 0.2821 7.7 4glw:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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