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BioLiP
>protein
LQLWSKFDVGDWLESIHLGEHRDRFEDHEIEGAHLPALTKEDFVELGVTRVGHRENIERALR

The query sequence (length=62) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2f44:A 65 62 1.0000 0.9538 1.0000 2.68e-40 2f44:B, 2f44:C
2 8atj:AAA 70 62 0.6613 0.5857 0.6613 1.37e-26
3 6brh:B 502 59 0.3065 0.0378 0.3220 0.013 6brg:A, 6brg:B, 6brg:C, 6brg:D, 6brh:A, 6brk:A
4 7kjc:A 376 54 0.2419 0.0399 0.2778 0.64 8bin:A, 8bio:A, 8bk0:A, 8bm8:A, 8boc:A, 8bod:A, 8bof:A, 8bog:A, 8boh:A, 8boi:A, 8bok:A, 8bom:A, 6fnf:A, 6fng:A, 6fnh:A, 6fnh:B, 6fnh:C, 6hes:A, 6het:A, 6heu:A, 6hev:A, 6hew:A, 6hex:A, 6hey:A, 5i9v:A, 5i9w:A, 5i9x:A, 5i9y:A, 5i9z:A, 5ia0:A, 5ia0:B, 5ia0:C, 5ia1:A, 5ia2:A, 5ia3:A, 5ia4:A, 5ia5:A, 7kja:A, 7kja:B, 7kjc:B, 1mqb:A, 1mqb:B, 5njz:A, 5nk0:A, 5nk1:A, 5nk2:A, 5nk3:A, 5nk4:A, 5nk5:A, 5nk6:A, 5nk7:A, 5nk8:A, 5nk9:A, 5nka:A, 5nkb:A, 5nkc:A, 5nkd:A, 5nke:A, 5nkf:A, 5nkg:A, 5nkh:A, 5nki:A, 6q7b:A, 6q7c:A, 6q7d:A, 6q7e:A, 6q7f:A, 6q7g:A, 8qqy:A, 8xpv:A
5 8hj4:C 130 43 0.2419 0.1154 0.3488 3.8
6 7cm7:A 620 29 0.1129 0.0113 0.2414 4.0 7cm6:A, 7cm6:B, 7cm6:C, 7cm6:D, 7cm6:E, 7cm6:F, 7cm6:G, 7cm6:H, 7cm7:B, 7cm7:C, 7cm7:D, 7cm7:E, 7cm7:F, 7cm7:G, 7cm7:H
7 7anw:A 645 29 0.1129 0.0109 0.2414 4.3 7anw:B, 7anw:C, 7anw:D, 7anw:E, 7anw:F, 7anw:G, 7anw:H, 8d0c:A, 8d0c:B, 8d0d:A, 8d0d:B, 8d0e:A, 8d0e:B, 8d0f:A, 8d0f:B, 8d0g:A, 8d0g:B, 8d0h:A, 8d0h:B, 8d0i:A, 8d0i:B, 7djt:A, 7djt:B, 7djt:C, 7djt:D, 7djt:E, 7djt:F, 7djt:G, 7djt:H, 8gni:A, 8gnj:A, 7nag:A, 7nag:B, 7nah:A, 7nah:B, 7nai:A, 7nai:B, 7naj:A, 7naj:B, 7nak:D, 7nak:C, 7nak:H, 7nak:G, 7nak:B, 7nak:A, 7nak:E, 7nak:F, 7nal:A, 7nal:B, 7nal:C, 7nal:D, 7nal:E, 7nal:F, 7nal:G, 7nal:H, 6o0q:A, 6o0q:B, 8p2l:A, 8p2l:B, 8p2l:C, 8p2l:D, 8p2l:E, 8p2l:F, 8p2l:G, 8p2l:H, 6zfx:A, 6zfx:B, 6zfx:C, 6zfx:D, 6zfx:E, 6zfx:F, 6zfx:G, 6zfx:H
8 6z1p:BI 1413 36 0.1935 0.0085 0.3333 6.2
9 7bew:A 330 23 0.1452 0.0273 0.3913 7.0 7bex:A
10 2ywc:A 475 20 0.1774 0.0232 0.5500 7.4 2ywc:B, 2ywc:C, 2ywc:D
11 8dqv:B 322 41 0.1935 0.0373 0.2927 9.5 8dqv:D, 7utd:B, 7utd:D, 7utd:F, 7utd:H, 7utd:J, 7utd:L, 7utd:N, 7utd:P, 7uur:D, 7uur:G, 7uus:B, 7uus:D, 7uus:F, 7uus:H, 7uus:J, 7uus:L, 7uus:N, 7uus:P

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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