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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
LPSLLLIDEAAAVLGRMIQGLRTGIPYIHTENDSIKANPILRTALWQAAYVLEKAYRRRYRVPWTARRYMRELTPRQDGR
NANREAVMAKEFPPGAELNSDHPVQEILPAMIIDAEDHILFCYLPSCVSPAIMTIIDAAVGTLATTKDGHLQKKSRAREG
ERARVEMQKVLGANWREALDLFRQGACKMTPGVLTFAPAWWPVGHENQLPGPASTLKPPKGEGRMFLSDIPIASALVGAI
LAQINQPLFESGVKVLRELYSNSKLTKDHSTVSKIIEIWFSPFSSLSLIVNRATPIHRDTSGPIEGMDILVTGGNYSNGV
LVTPSFNRRWTYNPGCVVALLGKLVLHGVPEVDGERYCMAHFWRERLFDAAGVPFPYPSKWQE

The query sequence (length=383) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8jkk:D 383 383 1.0000 1.0000 1.0000 0.0 8jkk:A, 8jkk:G, 8jkk:J, 7w5p:A, 7w5p:H, 7w5p:D, 7w5p:G
2 7vpn:C 356 383 0.8877 0.9551 0.8877 0.0 7vpn:A, 7vpn:B, 7vpn:D
3 7ane:t 226 156 0.1149 0.1947 0.2821 1.2
4 1ekz:A 76 43 0.0418 0.2105 0.3721 1.2
5 6avf:A 202 43 0.0470 0.0891 0.4186 2.4 6avg:B, 6avg:C, 4ozi:G, 7rk7:D, 7sg1:D, 7sg1:I, 7t2c:D
6 7onj:A 262 14 0.0261 0.0382 0.7143 5.4 7onj:B, 7onj:G, 7onj:C, 7onj:D, 7onj:E, 7onj:F, 7ooa:A, 7ooa:B, 7ooa:G, 7ooa:C, 7ooa:D, 7ooa:E, 7ooa:F
7 7p1v:A 384 99 0.0601 0.0599 0.2323 5.8 7p1q:A, 7p1r:A, 7p1r:B, 7p1r:C, 7p1r:D, 7p1s:A, 7p1s:B, 7p1s:C, 7p1s:D, 7p1u:A, 7p1u:B, 7p1v:B, 7p1v:C, 7p1v:D
8 7x8k:B 367 151 0.1044 0.1090 0.2649 6.2 7x8k:A, 7x8k:D
9 4adb:B 401 106 0.0731 0.0698 0.2642 6.4 4adb:A, 4adb:C, 4adb:D, 4adc:A, 4adc:B, 4adc:C, 4adc:D, 4add:A, 4add:B, 4add:C, 4add:D
10 3i39:X 635 84 0.0627 0.0378 0.2857 7.0 3b51:X, 3b52:X, 3b53:X, 7err:A, 5fle:X, 8omx:X, 8omy:X, 8on0:X, 8on1:X, 8on2:X, 8on3:X, 1su6:A, 1su7:A, 1su8:A, 1suf:A, 4udx:X, 4udy:X, 8x9d:A, 8x9e:A, 8x9f:A, 8x9g:A, 8x9h:A, 7xdm:A, 7xdn:A, 7xdp:A, 2yiv:X, 7zx3:X, 7zx5:X, 7zx6:X, 7zxc:X, 7zxj:X, 7zxl:X, 7zxx:X, 7zy1:X
11 6dnt:A 310 99 0.0705 0.0871 0.2727 7.1
12 5idu:C 405 100 0.0731 0.0691 0.2800 8.5 5idu:A, 5idu:B, 5idu:D
13 1r6m:A 236 41 0.0366 0.0593 0.3415 8.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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