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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
LPSLLLIDEAAAVLGRMIQGLRTGIPYIHTENDSIKANPILRTALWQAAYVLEKAYRRRYRVPWTARRYMRELTPRQDGR
NANREAVMAKEFPPGAELNSDHPVQEILPAMIIDAEDHILFCYLPSCVSPAIMTIIDAAVGTLATTKDGHLQKKSRAREG
ERANWREALDLFRQGACKMTPGVLTFAPAWWPVGHENQLPGPASTLKPPKGEGRMFLSDIPIASALVGAILAQINQPLFE
SGVKVLRELYSNSKLTKDHSTVSKIIEIWFSPFSSLSLIVNRATPIHRDTSGPIEGMDILVTGGNYSNGVLVTPSFNRRW
TYNPGCVVALLGKLVLHGVPEVDGERYCMAHFWRERLFDAAGVPFPYPSKWQESYT

The query sequence (length=376) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8jkk:D 383 383 0.9920 0.9739 0.9739 0.0 8jkk:A, 8jkk:G, 8jkk:J, 7w5p:A, 7w5p:H, 7w5p:D, 7w5p:G
2 7vpn:C 356 376 0.9122 0.9635 0.9122 0.0 7vpn:A, 7vpn:B, 7vpn:D
3 6avf:A 202 43 0.0479 0.0891 0.4186 2.4 6avg:B, 6avg:C, 4ozi:G, 7rk7:D, 7sg1:D, 7sg1:I, 7t2c:D
4 7x8k:B 367 155 0.1090 0.1117 0.2645 2.7 7x8k:A, 7x8k:D
5 7p1v:A 384 99 0.0612 0.0599 0.2323 5.2 7p1q:A, 7p1r:A, 7p1r:B, 7p1r:C, 7p1r:D, 7p1s:A, 7p1s:B, 7p1s:C, 7p1s:D, 7p1u:A, 7p1u:B, 7p1v:B, 7p1v:C, 7p1v:D
6 7onj:A 262 14 0.0266 0.0382 0.7143 5.4 7onj:B, 7onj:G, 7onj:C, 7onj:D, 7onj:E, 7onj:F, 7ooa:A, 7ooa:B, 7ooa:G, 7ooa:C, 7ooa:D, 7ooa:E, 7ooa:F
7 4adb:B 401 106 0.0745 0.0698 0.2642 5.9 4adb:A, 4adb:C, 4adb:D, 4adc:A, 4adc:B, 4adc:C, 4adc:D, 4add:A, 4add:B, 4add:C, 4add:D
8 6dnt:A 310 99 0.0718 0.0871 0.2727 7.4
9 5idu:C 405 100 0.0745 0.0691 0.2800 7.4 5idu:A, 5idu:B, 5idu:D
10 7ane:t 226 152 0.1090 0.1814 0.2697 7.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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