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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
LPSDPRNREVVFPAGRDPQWGNLETPVNASPLVKWFINNLPAYRPGLTPFRRGLEVGMAHGYFLFGPFAKLGPLRDAANA
NLAGLLGAIGLVVLFTLALSLYANSNPPTALASVTVPNPPDAFQSKEGWNNFASAFLIGGIGGAVVAYFLTSNLALIQGL
V

The query sequence (length=161) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6tcl:L2 167 158 0.9814 0.9461 1.0000 8.88e-111 6jeo:aL, 6jeo:bL, 6jeo:cL, 6jeo:dL, 6k61:L, 6k61:l, 6tcl:L1, 6tcl:LL, 6tcl:L
2 7qco:L 150 148 0.6584 0.7067 0.7162 9.32e-76 7qco:S, 7qco:s, 7qco:l
3 6kif:L 164 145 0.4845 0.4756 0.5379 4.20e-50 6kif:n, 6kif:V, 6kig:L, 6kig:n, 6kig:V
4 7coy:aL 147 141 0.4224 0.4626 0.4823 3.42e-43 7coy:cL, 7coy:bL, 7dwq:L
5 7y5e:LN 140 146 0.4224 0.4857 0.4658 4.67e-43 7y5e:L2, 7y7a:L7, 7y7a:Lo
6 5oy0:L 157 155 0.4472 0.4586 0.4645 1.78e-42 8am5:l, 8asl:l, 8asp:l, 6hqb:L, 4l6v:L, 4l6v:l, 4l6v:8, 6nwa:L, 6nwa:U, 6nwa:l, 5oy0:l, 5oy0:0, 7umh:L, 7umh:U, 7umh:l, 6uzv:L, 6uzv:0, 6uzv:l
7 7fix:L1 152 153 0.4472 0.4737 0.4706 1.91e-42 4fe1:L, 7fix:L2, 7fix:L3, 1jb0:L, 6k33:aL, 6k33:bL, 6k33:cL, 6lu1:L, 7m75:L, 7m76:L, 7m78:L, 3pcq:L, 6pfy:L, 6pfy:h, 6pfy:U, 6pgk:L, 6pgk:h, 6pgk:U, 6tra:L, 6trc:L, 6trc:l, 6trc:0, 6trd:L, 6trd:l, 6trd:0, 5zf0:L1, 5zf0:L2, 5zf0:L3, 5zf0:L4, 5zf0:L6, 5zf0:L5
8 7y7b:L 150 150 0.4224 0.4533 0.4533 2.07e-42 7y8a:L
9 6kmx:aL 172 163 0.4720 0.4419 0.4663 5.74e-41 6kmx:bL, 6kmx:cL
10 6fos:L 140 144 0.4161 0.4786 0.4653 9.88e-41 7blz:L, 5zgb:L, 5zgh:L
11 6vpv:L 160 139 0.4720 0.4750 0.5468 7.38e-40 6vpv:l, 6vpv:0
12 7lx0:U 163 162 0.4534 0.4479 0.4506 1.02e-39 7lx0:L, 7lx0:l, 6pnj:L, 6pnj:U, 6pnj:l
13 8wm6:L 151 150 0.4037 0.4305 0.4333 1.06e-39 8wmj:L, 8wmv:L, 8wmw:L
14 6zzx:L 157 152 0.4037 0.4140 0.4276 6.45e-38 6zzy:L
15 7s3d:L 170 155 0.4286 0.4059 0.4452 1.30e-37 7s3d:l, 7s3d:U
16 7yca:L 158 153 0.4348 0.4430 0.4575 1.59e-37
17 8wey:L 121 125 0.3913 0.5207 0.5040 3.01e-37
18 7a4p:L 140 147 0.4099 0.4714 0.4490 7.01e-37
19 6sl5:L 155 152 0.4286 0.4452 0.4539 5.67e-36
20 7d0j:L 159 155 0.4099 0.4151 0.4258 1.47e-35 7bgi:L, 7blx:L, 7dz7:L, 7dz8:L, 8h2u:L, 7zq9:L, 7zqc:L, 7zqd:L, 7zqd:L2
21 8htu:L 163 152 0.3789 0.3742 0.4013 1.87e-35 7ksq:L, 7kux:L, 6l35:L, 7xqp:L
22 7dr0:L 131 130 0.3913 0.4809 0.4846 6.20e-35 7dr1:L, 7dr2:aL, 7dr2:bL, 7dr2:cL, 7dr2:dL
23 8wgh:L 162 155 0.4161 0.4136 0.4323 7.23e-35
24 7y3f:1 466 142 0.4037 0.1395 0.4577 1.10e-34
25 6igz:L 155 156 0.3975 0.4129 0.4103 2.62e-33
26 8cmo:L 123 130 0.3727 0.4878 0.4615 7.82e-33
27 6kmw:aL 144 142 0.3851 0.4306 0.4366 8.40e-32 6kmw:cL, 6kmw:bL
28 4rku:L 163 161 0.4472 0.4417 0.4472 1.79e-31 7dkz:L, 8j6z:L, 8j7a:L, 8j7b:L, 5l8r:L, 3lw5:L, 7wfe:BL, 7wg5:BL, 4xk8:L, 4xk8:l, 4y28:L, 6yac:L, 6yez:L, 6zoo:L, 6zxs:L
29 6jo5:L 118 132 0.3665 0.5000 0.4470 7.03e-31 6ijj:L, 6ijo:L, 6jo6:L, 7zq9:L2
30 5zji:L 166 160 0.4410 0.4277 0.4437 1.97e-29 8bcv:L, 8bcw:L, 7ew6:L, 7ewk:L, 7f9o:L, 7f9o:o
31 2o01:L 164 155 0.4161 0.4085 0.4323 3.42e-28 7wfd:AL, 7wg5:AL, 2wsc:L, 2wse:L, 2wsf:L
32 6ly5:l 144 134 0.3727 0.4167 0.4478 9.00e-27
33 7f4v:aL 129 111 0.3292 0.4109 0.4775 3.03e-26 7f4v:cL, 7f4v:bL
34 6l4u:L 137 141 0.3602 0.4234 0.4113 3.11e-26
35 8jw0:l 253 131 0.2857 0.1818 0.3511 8.79e-20
36 8jjr:l 253 131 0.3043 0.1937 0.3740 1.19e-19
37 8jze:l 250 139 0.2981 0.1920 0.3453 3.02e-18 8jzf:l
38 8rjc:B 59 25 0.0683 0.1864 0.4400 3.8 8rjd:B
39 3bgu:A 106 53 0.0932 0.1415 0.2830 9.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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