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BioLiP
>protein
LPPEIAAVPELAKYWAQRYRLFSRFDDGIKLDREGWFSVTPEKIAEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALTGM
RVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWGGPDYATAETFDIRTMMSPDGFEIFRL
SKKITNNIVYFLPRNADIDQVASLAGPGGQVEIEQNFLNNKLKTITAYFGD

The query sequence (length=211) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3gdh:A 211 211 1.0000 1.0000 1.0000 5.74e-157 3egi:A, 3egi:B, 3egi:C, 3egi:D, 3gdh:B, 3gdh:C
2 1l3i:A 186 63 0.1090 0.1237 0.3651 8.37e-06 1l3i:B, 1l3i:C, 1l3i:D, 1l3i:E, 1l3i:F
3 5bxy:A 155 91 0.1564 0.2129 0.3626 1.87e-05 5bxy:B
4 2vs1:A 398 126 0.1469 0.0779 0.2460 9.87e-05 2jjq:A
5 5e72:A 323 80 0.1232 0.0805 0.3250 2.16e-04
6 3ldu:A 377 76 0.1280 0.0716 0.3553 2.61e-04
7 4nec:B 244 45 0.0758 0.0656 0.3556 7.88e-04 4nec:A, 4nec:C, 4nec:D
8 1wzn:A 244 74 0.1185 0.1025 0.3378 8.73e-04 1wzn:B, 1wzn:C
9 6uv6:C 264 59 0.0948 0.0758 0.3390 0.001 6uv6:A, 6uv6:B
10 7qw6:A 556 113 0.1564 0.0594 0.2920 0.002 7qw5:A, 7qw7:A
11 3tm5:A 368 77 0.1232 0.0707 0.3377 0.012 3tlj:A, 3tlj:B, 3tm4:A, 3tm4:B, 3tm5:B
12 5u1e:A 321 70 0.1043 0.0685 0.3143 0.020 5tyq:A, 5u0n:A, 5u0t:A, 5u18:A, 5u19:A, 5u1i:A, 5u4t:A
13 7mqa:NL 278 93 0.0995 0.0755 0.2258 0.021 7wts:3, 1zq9:A, 1zq9:B
14 7bgg:A 216 55 0.0806 0.0787 0.3091 0.025 7ndm:A, 7nmk:A, 7noy:A
15 2cww:B 382 83 0.1090 0.0602 0.2771 0.026 2cww:A
16 1ve3:B 226 54 0.0948 0.0885 0.3704 0.031 1ve3:A
17 2zzn:A 336 56 0.1043 0.0655 0.3929 0.041 3ay0:A, 2yx1:A, 2zzm:A, 2zzn:B
18 1sg9:A 274 83 0.0995 0.0766 0.2530 0.043 1nv8:A, 1nv8:B, 1nv9:A, 1sg9:B, 1sg9:C, 1vq1:A, 1vq1:B
19 3ay0:B 314 111 0.1469 0.0987 0.2793 0.043 2yx1:B
20 2bh2:A 418 71 0.0853 0.0431 0.2535 0.12 2bh2:B, 1uwv:A
21 4kif:B 339 57 0.0948 0.0590 0.3509 0.13 4kib:A, 4kib:B, 4kic:A, 4kic:B, 4kif:A, 4kig:A, 4kig:B, 4m6x:A, 4m6x:B, 4m6y:A, 4m6y:B, 4m71:A, 4m71:B, 4m72:A, 4m72:B, 4m73:A, 4m73:B, 4m74:A, 4m74:B
22 7aju:JL 283 64 0.0806 0.0601 0.2656 0.13 8cbj:y, 6rbd:y, 7wtl:JL, 7wtm:JL, 6zqd:JL, 6zqe:JL, 6zqf:JL, 6zqg:JL
23 4pne:B 272 59 0.0711 0.0551 0.2542 0.13 4pne:A
24 3s2e:A 340 44 0.0948 0.0588 0.4545 0.16 3s1l:A, 3s1l:B, 3s1l:C, 3s1l:D, 3s2e:B, 3s2e:C, 3s2e:D, 3s2e:E, 3s2e:F, 3s2e:G, 3s2e:H, 3s2f:A, 3s2f:B, 3s2f:C, 3s2f:D, 3s2f:E, 3s2f:F, 3s2f:G, 3s2f:H, 3s2g:A, 3s2g:B, 3s2g:C, 3s2g:D, 3s2g:E, 3s2g:F, 3s2g:G, 3s2g:H, 3s2i:A, 3s2i:B, 3s2i:C, 3s2i:D, 3s2i:E, 3s2i:F, 3s2i:G, 3s2i:H
25 3a25:A 264 71 0.0995 0.0795 0.2958 0.16 3a26:A
26 2zif:B 243 44 0.0758 0.0658 0.3636 0.18 2zif:A
27 7wdq:A 336 111 0.1517 0.0952 0.2883 0.33 7wdq:B, 7wdq:C, 7wdw:A, 7wdw:B, 7wdw:C, 7wdw:D
28 2okc:B 426 96 0.1185 0.0587 0.2604 0.37 2okc:A
29 6zxv:A 325 50 0.0758 0.0492 0.3200 0.42 6zxv:B, 6zxw:G
30 5zve:B 384 103 0.1185 0.0651 0.2427 0.45 5zve:A, 5zvg:B, 5zvg:A, 5zvh:B, 5zvh:A
31 6mro:A 194 64 0.0948 0.1031 0.3125 0.63 8gdu:A
32 6i3d:B 218 51 0.0711 0.0688 0.2941 0.90 3a7e:A, 3bwm:A, 3bwy:A, 6i3c:A, 6i3d:A, 5lsa:A, 4pyj:A, 4pyk:A, 4xuc:A, 4xud:A, 4xue:B, 4xue:A
33 5je1:A 244 83 0.1232 0.1066 0.3133 0.94 5jdy:A, 5jdy:B, 5jdz:A, 5jdz:B, 5je0:A, 5je0:B, 5je1:B, 5je2:A, 5je2:B, 5je3:A, 5je3:B, 5je4:A, 5je4:B, 5je5:A
34 5bp7:A 249 78 0.1185 0.1004 0.3205 1.1 5bp7:B, 5bp7:C
35 2oyr:A 245 103 0.1374 0.1184 0.2816 1.2
36 4z6k:A 345 38 0.0711 0.0435 0.3947 1.3 4z6k:B, 4z6k:C, 4z6k:D
37 5epe:A 248 89 0.1327 0.1129 0.3146 1.3
38 6jcl:G 219 36 0.0569 0.0548 0.3333 1.4 6jcl:A, 6jcl:C, 6jcl:B, 6jcl:E, 6jcl:D, 6jcl:H, 6jcl:F
39 5log:A 222 34 0.0664 0.0631 0.4118 1.5 5lhm:A, 5log:B
40 1llu:A 341 39 0.0758 0.0469 0.4103 1.6 1llu:B, 1llu:C, 1llu:D, 1llu:E, 1llu:F, 1llu:G, 1llu:H
41 6z42:A 336 38 0.0711 0.0446 0.3947 1.6 6z42:B, 6z42:C, 6z42:D
42 5xj2:A 454 84 0.0900 0.0419 0.2262 1.6 5xj2:B, 5xj2:C, 5xj2:D, 5zq0:A, 5zq1:A, 5zq8:B, 5zq8:A, 5zth:A
43 3j9d:A 746 59 0.0948 0.0268 0.3390 1.7
44 3meq:A 341 38 0.0758 0.0469 0.4211 2.5 3meq:B, 3meq:C, 3meq:D
45 3sxj:A 245 54 0.0806 0.0694 0.3148 4.2 3sxj:B, 3t0i:A, 3t0i:B
46 5ufm:A 225 28 0.0616 0.0578 0.4643 4.7 5ufm:B, 5ufn:A, 5ufn:B
47 7wzg:B 243 71 0.0995 0.0864 0.2958 4.9 7wzg:A, 7wzg:C, 7wzg:D, 7wzg:E, 7wzg:F
48 7zkh:A 266 55 0.0806 0.0639 0.3091 5.0 7zkg:A, 7zkg:B
49 3cjt:A 254 57 0.0806 0.0669 0.2982 5.3 3cjq:A, 3cjq:D, 3cjq:G, 3cjr:A, 3cjt:C, 3cjt:E, 3cjt:G, 3cjt:I, 3cjt:K, 3cjt:M, 3cjt:O, 3egv:A, 2nxe:A, 2nxe:B, 2zbp:A, 2zbq:A, 2zbr:A
50 2b3t:A 276 71 0.0900 0.0688 0.2676 5.5 1t43:A
51 7pnv:b 323 77 0.1137 0.0743 0.3117 6.9
52 8uar:A 352 61 0.1137 0.0682 0.3934 7.4 6ffx:A, 6ffx:B, 6ffx:C, 6ffx:D, 6ffz:A, 6ffz:B, 6ffz:C, 6ffz:D, 6fg0:A, 6fg0:B, 6fg0:C, 6fg0:D, 3jv7:A, 3jv7:B, 3jv7:C, 3jv7:D, 5o8h:A, 5o8h:B, 5o8h:C, 5o8h:D, 5o8q:A, 5o8q:B, 5o8q:C, 5o8q:D, 5o8q:E, 5o8q:F, 5o8q:G, 5o8q:H, 5o9d:A, 5o9d:B, 5o9d:C, 5o9d:D, 5o9f:A, 5o9f:B, 5o9f:C, 5o9f:D, 5od3:A, 5od3:B, 5od3:C, 5od3:D, 8uar:B, 8uar:C, 8uar:D, 8uar:E, 8uar:F, 8uar:G, 8uar:H, 8uar:I, 8uar:J, 8uar:K, 8uar:L, 8uas:A, 8uas:B, 8uas:C, 8uas:D, 8uas:E, 8uas:F, 8uas:G, 8uas:H, 8uas:I, 8uas:J, 8uas:K, 8uas:L, 2xaa:A, 2xaa:B, 2xaa:C, 2xaa:D
53 1wg8:A 281 38 0.0711 0.0534 0.3947 8.4 1wg8:B
54 4d2i:A 464 93 0.1232 0.0560 0.2796 9.1 4d2i:B
55 7cpx:A 2262 53 0.0806 0.0075 0.3208 9.3 7cpx:B, 7cpy:A, 7cpy:B
56 8d8p:A 420 35 0.0569 0.0286 0.3429 9.4 8d8p:B
57 7v6h:A 267 49 0.0758 0.0599 0.3265 9.8 7v6h:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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