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BioLiP
>protein
LPNITILATGGTNLVNAVPQLKDIANVKGEQVVNIGSQDMNDNVWLTLAKKINTDCDKTDGFVITHGTDTMEETAYFLDL
TVKCDKPVVMVGAMRPSTSMSADGPFNLYNAVVTAADKASANRGVLVVMNDTVLDGRDVTKTNTTDVATFKSVNYGPLGY
IHNGKIDYQRTPARKHTSDTPFDVSKLNELPKVGIVYNYANASDLPAKALVDAGYDGIVSAGVGNGNLYKSVFDTLATAA
KTGTAVVRSSRVPTGATTQDAEVDDAKYGFVASGTLNPQKARVLLQLALTQTKDPQQIQQIFNQY

The query sequence (length=305) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6pa3:A 334 326 0.9934 0.9072 0.9294 0.0 3eca:A, 3eca:B, 3eca:C, 3eca:D, 8ecd:A, 8ecd:B, 8ecd:C, 8ecd:D, 8ece:A, 8ece:B, 8ece:C, 8ece:D, 6eok:B, 6eok:C, 6eok:D, 1ho3:A, 1ho3:B, 1jaz:A, 1jaz:B, 7m11:A, 7m11:B, 7m11:C, 7m11:D, 5mq5:A, 5mq5:C, 5mq5:B, 5mq5:D, 1nns:A, 1nns:B, 6pa2:A, 6pa2:C, 6pa2:B, 6pa2:D, 6pa3:B, 6pa3:C, 6pa3:D, 6pa4:A, 6pa4:B, 6pa4:C, 6pa4:D, 6pa5:A, 6pa5:B, 6pa5:C, 6pa5:D, 6pa5:E, 6pa5:F, 6pa5:G, 6pa5:H, 6pa6:A, 6pa6:B, 6pa6:C, 6pa6:D, 6pa8:A, 6pa8:B, 6pa8:C, 6pa8:D, 6pa9:A, 6pa9:B, 6paa:A, 6paa:B, 6paa:C, 6paa:D, 6pab:A, 6pab:B, 6pab:C, 6pab:D, 6pac:A, 6pac:B, 6pac:C, 6pac:D, 7r5q:A, 7r5q:B, 7r5q:C, 7r5q:D, 6uog:A, 6uog:B, 6uog:C, 6uog:D, 6uog:E, 6uog:F, 6uog:G, 6uog:H, 6uoh:A, 6uoh:B, 6v24:A, 6v24:D, 6v25:A, 6v25:B, 6v26:A, 6v26:B, 6v26:C, 6v26:D, 6v29:A, 6v29:B, 6v29:C, 6v29:D, 6v2a:A, 6v2a:B, 6v2a:C, 6v2a:D, 6v2b:A, 6v2b:B, 6v2b:C, 6v2b:D, 6v5f:A, 6v5f:D
2 5k3o:A 328 327 0.5574 0.5183 0.5199 6.83e-115 5k3o:B, 5k3o:C, 5k3o:D, 5k45:A, 5k45:B, 5k45:C, 5k45:D, 5k4g:A, 5k4g:B, 5k4g:C, 5k4g:D, 5k4h:A, 5k4h:B, 5k4h:C, 5k4h:D, 5k4h:E, 5k4h:F, 5k4h:G, 5k4h:H, 6rue:A, 6rue:B, 6rue:C, 6rue:D, 6ruf:A, 6ruf:B, 6ruf:C, 6ruf:D
3 2wlt:A 326 327 0.5148 0.4816 0.4801 4.74e-105 2wt4:A
4 1djo:A 330 299 0.4492 0.4152 0.4582 6.06e-90 1djo:B, 1djp:A, 1djp:B, 4pga:A, 4pga:B, 6wyw:A, 6wyw:B, 6wyw:C, 6wyw:D, 6wyx:A, 6wyx:B, 6wyx:C, 6wyx:D, 6wyy:A, 6wyy:B, 6wyy:C, 6wyy:D, 6wyz:A, 6wyz:B, 6wyz:C, 6wyz:D, 6wz4:A, 6wz4:B, 6wz4:C, 6wz4:D, 6wz6:A, 6wz6:B, 6wz6:C, 6wz6:D
5 2gvn:A 325 329 0.4984 0.4677 0.4620 1.14e-86 2gvn:B, 2gvn:C, 2gvn:D, 2gvn:E, 2gvn:F, 2gvn:G, 2gvn:H, 2hln:A, 2hln:B, 2hln:E, 2hln:F, 2hln:C, 2hln:D, 2hln:G, 2hln:H, 2hln:I, 2hln:J, 2hln:K, 2hln:L, 2jk0:A, 2jk0:B, 2jk0:C, 2jk0:D, 2jk0:E, 2jk0:F, 2jk0:G, 2jk0:H
6 7u6m:C 342 329 0.4951 0.4415 0.4590 2.24e-85 5f52:A, 5f52:B, 5f52:C, 5f52:D, 1hfw:A, 1hfw:B, 1hfw:C, 1hfw:D, 1hg0:A, 1hg0:B, 1hg0:C, 1hg0:D, 1hg1:A, 1hg1:B, 1hg1:C, 1hg1:D, 5hw0:A, 5hw0:B, 5hw0:C, 5hw0:D, 5i3z:A, 5i3z:B, 5i3z:C, 5i3z:D, 5i48:A, 5i48:B, 5i48:C, 5i48:D, 5i4b:A, 5i4b:B, 5i4b:C, 1jsl:A, 1jsl:B, 1jsl:C, 1jsl:D, 1jsr:A, 1jsr:B, 1jsr:C, 1jsr:D, 6pae:A, 6pae:B, 6pae:C, 6pae:D, 7u6m:A, 7u6m:B, 7u6m:D
7 1zq1:A 437 335 0.3410 0.2380 0.3104 1.16e-33 1zq1:B
8 8h4a:B 328 241 0.2623 0.2439 0.3320 2.92e-30 7c8q:A, 7c8q:B, 7c8x:A, 7c8x:B, 7c91:B, 7c91:A, 7cb4:B, 7cb4:A, 7cbr:A, 7cbr:B, 7cbu:A, 7cbu:B, 7cbw:A, 7cbw:B, 8h44:A, 8h44:B, 8h45:A, 8h45:B, 8h46:A, 8h46:B, 8h47:A, 8h47:B, 8h48:A, 8h48:B, 8h49:A, 8h49:B, 8h4a:A, 8h4b:A, 8h4b:B, 8h4c:A, 8h4c:B, 8h4d:A, 8h4d:B, 8h4e:A, 8h4e:B, 8h4f:A, 8h4f:B, 8h4g:A, 8h4g:B
9 5ot0:A 328 290 0.2525 0.2348 0.2655 1.01e-20 5ot0:B, 5ot0:C, 5ot0:D, 5ot0:E, 5ot0:F
10 4q0m:A 327 301 0.2623 0.2446 0.2658 3.12e-20 5b5u:A, 5b74:B, 4nje:A
11 7r6b:B 301 273 0.2590 0.2625 0.2894 1.47e-18
12 6nxc:B 336 282 0.2557 0.2321 0.2766 4.05e-17 2him:A, 2him:B, 2him:C, 2him:D, 6nxc:A, 6nxc:C, 6nxc:D, 6nxd:A, 6nxd:B, 6nxd:C, 6nxd:D, 2p2n:A, 2p2n:B, 2p2n:C, 2p2n:D
13 5dnd:D 357 225 0.2033 0.1737 0.2756 3.23e-15 5dnc:A, 5dnc:B, 5dnc:C, 5dnc:D, 5dnd:A, 5dnd:B, 5dnd:C, 5dne:A, 5dne:B, 5dne:C, 5dne:D, 4r8l:A, 4r8l:B, 4r8l:C, 4r8l:D
14 8uou:A 169 77 0.1016 0.1834 0.4026 1.55e-05 8uou:B, 8up3:E, 8up3:F, 8up6:B, 8up6:C, 8up8:A, 8up8:B, 8up8:C
15 4z11:A 513 30 0.0393 0.0234 0.4000 1.3 4z0y:A, 4z0y:B, 4z0y:D, 4z0y:C, 4z0z:A, 4z0z:B, 4z0z:C, 4z0z:D, 4z10:A, 4z10:C, 4z10:B, 4z10:D, 4z10:E, 4z10:F, 4z11:B, 4z11:C, 4z11:D, 4z12:A, 4z12:B, 4z13:A, 4z13:B, 4z14:D, 4z14:B, 4z14:H, 4z14:F, 4z14:C, 4z14:E, 4z14:G, 4z14:A
16 1x9l:A 149 27 0.0361 0.0738 0.4074 7.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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