Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
LPMPMRFRHLKKTSKEAVGVYRSPIHGRGLFCKRNIDAGEMVIEYAGIVIRSILTDKREKYYDSKGIGSSYMFRIDDSEV
VDATMHGNAARFINHSCEPNCYSRVINIDGQKHIVIFAMRKIYRGEELTYDYKFPIEDASNKLPCNCGAKKCRKFLN

The query sequence (length=157) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2w5z:A 180 157 0.9745 0.8500 0.9745 8.70e-112 5f5e:A, 5f6l:A, 6pwv:C, 6pww:C, 7u5v:A, 6u9k:A, 6u9k:B, 6u9m:A, 6u9m:B, 6u9n:A, 6u9n:B, 6u9r:A, 6u9r:B, 2w5y:A, 7w67:C, 7w6a:C, 7w6i:C, 7w6j:C
2 6kiu:K 179 157 0.9172 0.8045 0.9172 1.17e-101 6kiv:K, 6kix:K, 6kiz:K, 7ud5:K
3 7bre:B 163 157 0.8599 0.8282 0.8599 1.64e-99 7bre:E
4 7w6l:C 158 152 0.4522 0.4494 0.4671 3.05e-47 5f59:A, 5f6k:C, 5f6k:E, 6kiw:K, 7w6l:E
5 6ugm:M 188 157 0.4841 0.4043 0.4841 1.43e-46
6 6uh5:M 222 142 0.4777 0.3378 0.5282 7.22e-46 6chg:C
7 6ven:N 218 143 0.4586 0.3303 0.5035 1.36e-44
8 4z4p:A 161 151 0.4331 0.4224 0.4503 7.58e-42
9 7at8:A 311 130 0.3248 0.1640 0.3923 1.06e-24
10 8fbh:A 232 139 0.3185 0.2155 0.3597 1.11e-24 8fbg:A, 8fbg:B, 6kqp:A, 6kqq:A, 6kqq:B, 3ooi:A
11 7td5:F 447 117 0.3185 0.1119 0.4274 2.44e-24
12 9c8u:A 475 130 0.3248 0.1074 0.3923 2.93e-24
13 5ij7:B 469 130 0.3248 0.1087 0.3923 2.94e-24 6b3w:A, 6b3w:B, 6c23:K, 6c24:K, 5ij7:A, 5ij8:A, 5ij8:B, 4w2r:A, 4w2r:B
14 8tas:E 570 130 0.3248 0.0895 0.3923 3.47e-24 8tb9:E
15 8t9g:C 536 130 0.3248 0.0951 0.3923 3.68e-24 8fyh:A, 8fyh:G
16 7td5:A 497 117 0.3185 0.1006 0.4274 3.83e-24
17 6wkr:C 606 130 0.3248 0.0842 0.3923 3.94e-24 4mi0:A, 4mi5:A, 8t9g:I
18 5hyn:A 581 130 0.3248 0.0878 0.3923 4.20e-24 5hyn:F, 5hyn:K, 5hyn:Q, 5ls6:A, 5ls6:G, 5ls6:J, 5ls6:D
19 5wg6:A 517 125 0.3121 0.0948 0.3920 2.36e-23 5wg6:C
20 7kso:A 395 123 0.3121 0.1241 0.3984 3.37e-23 7ksr:A, 7ktp:A
21 5lsu:A 231 130 0.3185 0.2165 0.3846 5.58e-23 7cro:I, 7e8d:K, 5lsu:B
22 2r3a:A 270 159 0.3694 0.2148 0.3648 8.07e-23 6p0r:A, 6p0r:B
23 5jlb:A 248 149 0.2994 0.1895 0.3154 8.15e-22 7ea8:L, 4fmu:A, 4h12:A, 6j9j:A, 5jjy:A, 5jle:A, 5lss:A, 5lsx:A, 5lsy:A, 5lsz:A, 5lt6:A, 5lt6:B, 5lt7:A, 5lt8:A, 7lzb:A, 7lzd:A, 7lzf:A, 8q5p:A, 7ty2:A, 7ty3:A, 5v21:A, 5v22:A, 6vdb:A
24 6cen:A 226 137 0.2994 0.2080 0.3431 9.70e-22 7crp:I, 7crq:L, 7crq:I, 7crr:I, 5upd:A
25 7ea5:K 228 149 0.2994 0.2061 0.3154 7.82e-21
26 6nzo:S 233 149 0.3185 0.2146 0.3356 1.72e-20 6px3:S
27 6ine:A 247 138 0.3057 0.1943 0.3478 1.74e-20 6ago:A, 6ago:B, 3ope:A, 3ope:B, 6wzw:A, 6x0p:A, 6x0p:B, 6x0p:C, 6x0p:D, 4ynm:A, 4ynm:B, 4ynp:A, 4ynp:B, 4ypa:A, 4ypa:B, 4ypa:C, 4ypa:D, 4ype:A, 4ype:B, 4ypu:A, 4ypu:B
28 3hna:A 280 157 0.3503 0.1964 0.3503 1.58e-17 3fpd:A, 3fpd:B, 3hna:B, 4i51:A, 4i51:B, 2igq:A, 2igq:B, 6mbo:A, 6mbo:B, 6mbp:A, 6mbp:B, 3mo0:A, 3mo0:B, 3mo2:A, 3mo2:B, 3mo2:C, 3mo2:D, 3mo5:A, 3mo5:B, 3mo5:C, 3mo5:D, 2rfi:A, 2rfi:B, 3sw9:A, 3sw9:B, 3swc:A, 3swc:B, 7t7m:A, 7t7m:B, 7t7m:C, 7t7m:D, 5ttg:A, 5ttg:B, 5tuz:A, 5tuz:B, 5v9j:A, 5v9j:B, 5vsd:A, 5vsd:B, 5vsf:A, 5vsf:B, 8xpt:A, 8xpt:B, 8xpt:C, 8xpt:D
29 4qen:A 472 148 0.3376 0.1123 0.3581 7.56e-17 4qeo:A, 4qep:A
30 7x73:A 274 155 0.3312 0.1898 0.3355 8.65e-16 7btv:A, 7btv:B, 7buc:A, 7buc:B, 7dcf:A, 7dcf:B, 5jhn:A, 5jhn:B, 5jin:A, 5jin:B, 5jiy:A, 5jiy:B, 5jj0:A, 5jj0:B, 3k5k:A, 3k5k:B, 4nvq:A, 4nvq:B, 2o8j:A, 2o8j:B, 2o8j:C, 2o8j:D, 3rjw:A, 3rjw:B, 5t0k:A, 5t0k:B, 5t0m:A, 5t0m:B, 7t7l:A, 7t7l:B, 7t7l:C, 7t7l:D, 5ttf:A, 5ttf:B, 5ttf:C, 5ttf:D, 5tuy:A, 5tuy:B, 5v9i:A, 5v9i:B, 5v9i:C, 5v9i:D, 5vsc:A, 5vsc:B, 5vse:A, 5vse:B, 7x73:B, 7xua:A, 7xua:B, 7xub:A, 7xub:B, 7xuc:A, 7xuc:B, 7xud:A, 7xud:B
31 7xpx:K 167 110 0.2611 0.2455 0.3727 3.78e-15 6boz:A, 6boz:B, 2bqz:A, 2bqz:E, 3f9w:B, 3f9w:A, 3f9w:C, 3f9w:D, 3f9x:B, 3f9x:A, 3f9x:C, 3f9x:D, 3f9y:A, 3f9y:B, 3f9z:B, 3f9z:A, 3f9z:C, 3f9z:D, 4ij8:A, 4ij8:B, 5t5g:A, 5teg:A, 5teg:B, 5th7:A, 5th7:B, 5w1y:A, 5w1y:B, 1zkk:A, 1zkk:B, 1zkk:C, 1zkk:D
32 3bo5:A 269 167 0.3376 0.1970 0.3174 4.88e-15
33 1peg:A 266 167 0.3248 0.1917 0.3054 1.85e-14 1ml9:A, 1peg:B
34 6a5m:A 488 176 0.2994 0.0963 0.2670 2.02e-14 6a5k:A
35 6z2a:A 283 160 0.3248 0.1802 0.3187 2.23e-14 6box:A, 6box:B, 6bp4:B, 6bp4:A, 1mvh:A, 1mvx:A, 6z2a:B
36 5tqr:B 809 132 0.2739 0.0532 0.3258 9.69e-14 5bjs:B, 5vk3:B
37 5kjh:B 807 132 0.2739 0.0533 0.3258 2.46e-13 5m5g:B
38 5kkl:B 839 132 0.2739 0.0513 0.3258 2.67e-13
39 5wf7:B 765 133 0.2803 0.0575 0.3308 9.05e-13 5kji:B
40 5wfd:B 774 132 0.2611 0.0530 0.3106 8.04e-12 5wfc:B
41 6a5n:A 502 163 0.2739 0.0857 0.2638 4.00e-11
42 2g46:A 119 116 0.2293 0.3025 0.3103 7.57e-05 2g46:B, 3kmt:A, 3kmt:B, 3kmt:C
43 8sr6:A 451 117 0.2038 0.0710 0.2735 0.002 5czy:A, 8swi:A
44 5ex0:A 429 41 0.1274 0.0466 0.4878 0.006 7bj1:A, 5ccl:A, 5ccm:A, 5ex3:A, 5hi7:A, 5hq8:A, 5hq8:B, 6ijl:A, 3mek:A, 7o2a:A, 7o2b:A, 7o2c:A, 6o9o:A, 8owo:A, 3oxf:A, 3oxf:B, 3oxg:A, 3oxl:A, 6p6g:A, 6p6k:A, 6p7z:A, 6paf:A, 3pdn:A, 7qlb:A, 7qnr:A, 7qnu:A, 3qwp:A, 3ru0:A, 3ru0:B, 5v37:A, 5xxd:A, 5xxg:A, 5xxj:A, 5yjo:A, 6yuh:A, 6zrb:A
45 4o30:A 217 54 0.1274 0.0922 0.3704 0.021 4o30:B, 5va6:A, 5va6:B, 5vac:A, 5vah:A, 5vah:B, 5vbc:A, 5vbc:B
46 8qma:J 426 53 0.1210 0.0446 0.3585 0.036 8r5o:L, 8r6s:L, 8ras:L, 8rdj:L
47 4au7:A 243 50 0.1210 0.0782 0.3800 0.13 4au7:B, 3rq4:A
48 7yrg:L 240 50 0.1146 0.0750 0.3600 0.14
49 8t9f:K 264 47 0.1083 0.0644 0.3617 0.16 4bup:A, 4bup:B, 5cpr:B, 8jhf:K, 8jhg:K, 3s8p:A, 3s8p:B, 5wbv:A, 5wbv:B, 7yrd:K, 7yrg:K
50 4nj5:A 482 158 0.2420 0.0788 0.2405 0.75
51 3n71:A 468 52 0.1274 0.0427 0.3846 0.79
52 6m4j:A 347 57 0.1274 0.0576 0.3509 1.2 6m4j:B
53 3tri:A 272 81 0.1401 0.0809 0.2716 2.6 3tri:B
54 7pwh:AAA 203 37 0.0955 0.0739 0.4054 3.1
55 4k50:A 460 69 0.1083 0.0370 0.2464 3.5 4k50:I, 4k50:E, 4k50:M, 1tp7:A
56 6jcy:C 1139 62 0.1210 0.0167 0.3065 4.6 6bzo:C, 6c04:C, 6c06:C, 6dv9:C, 6dvb:C, 6dvc:C, 6dvd:C, 6dve:C, 8e74:C, 8e79:C, 8e82:C, 8e8m:C, 8e95:C, 6edt:C, 6ee8:C, 6eec:C, 8ehq:C, 8ej3:C, 8eoe:C, 8eof:C, 8eos:C, 8eot:C, 8exy:C, 6fbv:C, 8hih:C, 6jcx:C, 7kif:C, 7kin:C, 6koo:C, 6kop:C, 6koq:C, 6m7j:C, 7p5x:AC, 7rwi:C, 6tye:C, 6tyf:C, 6tyg:C, 7u22:C, 5uh5:C, 5uh6:C, 5uh8:C, 5uh9:C, 5uha:C, 5uhb:C, 5uhc:C, 5uhd:C, 5uhe:C, 5uhf:C, 5uhg:C, 5vi5:C, 6vvx:C, 6vvy:C, 6vvz:C, 6vw0:C, 5zx2:C
57 4hei:A 92 51 0.0828 0.1413 0.2549 5.7 4hei:B

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218