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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
LPKLVITHRVHEEILQLLAPHCELITNQTDSTLTREEILRRCRDAQAMMAFMPDRVDADFLQACPELRVIGCALKGFDNF
DVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGQFRGWQPRFYGTGLDNATVGFLGMGAIGLAMA
DRLQGWGATLQYHAAKALDTQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVV
DEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAVRLEIERCAAQNILQALAGERP
INAVNRLPKA

The query sequence (length=330) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4e5p:A 332 330 0.9970 0.9910 0.9970 0.0 4e5k:A, 4e5k:B, 4e5k:C, 4e5k:D, 4e5m:A, 4e5m:B, 4e5n:A, 4e5n:B, 4e5n:C, 4e5n:D, 4e5n:E, 4e5n:F, 4e5n:G, 4e5n:H, 4e5p:B, 4e5p:C, 4e5p:D, 4e5p:E, 4e5p:F, 4ebf:A, 4ebf:B, 4ebf:C, 4ebf:D, 4nu5:A, 4nu5:B, 4nu6:A, 4nu6:B
2 6ih6:A 330 326 0.5545 0.5545 0.5613 4.97e-126 6ih3:A, 6ih5:B, 6ih6:B
3 5aov:A 334 330 0.3394 0.3353 0.3394 1.20e-65
4 6bii:A 332 330 0.3576 0.3554 0.3576 2.31e-63 6bii:B
5 2dbq:A 333 330 0.3303 0.3273 0.3303 4.95e-52 2dbr:A, 2dbr:B, 2dbr:C, 2dbr:D, 2dbr:E, 2dbr:F, 2dbz:A, 2dbz:B
6 7dkm:A 306 283 0.2727 0.2941 0.3180 1.01e-40 7cvp:B, 6cwa:A, 6cwa:B, 7dkm:B, 7ewh:A, 7ewh:B, 2g76:A, 2g76:B, 5n53:B, 5n53:A, 5n6c:A, 5n6c:B, 5nzo:B, 5nzo:A, 5nzp:B, 5nzp:A, 5nzq:B, 5nzq:A, 5ofm:B, 5ofm:A, 5ofv:B, 5ofv:A, 5ofw:B, 5ofw:A, 6plf:A, 6plf:B, 6plg:A, 6plg:B, 6plg:C, 6plg:D, 6plg:E, 6plg:F, 6plg:G, 6plg:H, 6rih:A, 6rih:B, 6rj2:A, 6rj2:B, 6rj3:A, 6rj3:B, 6rj5:A, 6rj5:B, 6rj6:A, 6rj6:B, 7va1:B, 7va1:A, 7va1:C, 7va1:D
7 2gcg:A 324 322 0.3030 0.3086 0.3106 1.98e-38 2gcg:B, 2gcg:C, 2gcg:D
8 3baz:A 311 262 0.2394 0.2540 0.3015 2.57e-35
9 3dc2:A 526 291 0.2909 0.1825 0.3299 9.61e-34 3dc2:B, 3ddn:B
10 5v6q:B 319 316 0.2939 0.3041 0.3070 5.99e-33 5j23:A, 5j23:B, 5j23:C, 5j23:D, 5v6q:A, 5v6q:C, 5v6q:D, 5v7g:A, 5v7g:B, 5v7g:C, 5v7g:D, 5v7n:A, 5v7n:B, 5v7n:C, 5v7n:D
11 4zgs:A 346 275 0.2697 0.2572 0.3236 9.27e-31 4zgs:B, 4zgs:C, 4zgs:D, 4zgs:E, 4zgs:F, 4zgs:G, 4zgs:H
12 5z20:F 336 277 0.2879 0.2827 0.3430 1.34e-29 5z20:A, 5z20:B, 5z20:C, 5z20:D, 5z20:E
13 3kb6:B 334 261 0.2242 0.2216 0.2835 8.49e-29 3kb6:A, 3kb6:C, 3kb6:D
14 2ekl:A 312 284 0.2121 0.2244 0.2465 1.82e-28
15 1wwk:A 304 317 0.2697 0.2928 0.2808 3.46e-28 1wwk:B
16 7cvp:A 254 226 0.2182 0.2835 0.3186 1.07e-27
17 2dld:A 337 313 0.2636 0.2582 0.2780 1.42e-25 2dld:B
18 4cuk:A 330 304 0.2697 0.2697 0.2928 1.68e-24 4cuk:D
19 1j49:A 332 314 0.2636 0.2620 0.2771 9.01e-24 1j49:B
20 8ati:A 330 306 0.2727 0.2727 0.2941 3.62e-23 8ati:B, 8ati:C, 8ati:D, 4lcj:A, 4lcj:B, 4lcj:C, 4lcj:D, 4lcj:E, 4lcj:F, 4lcj:G, 4lcj:H, 2ome:A, 2ome:B, 2ome:C, 2ome:D, 2ome:E, 2ome:F, 2ome:G, 2ome:H, 6wkw:D, 6wkw:C, 6wkw:B, 6wkw:A
21 3wr5:A 401 309 0.2606 0.2145 0.2783 5.77e-23 6juj:A, 6juj:B, 6juk:A, 6juk:B, 2nad:A, 2nad:B, 8oq2:A, 8oq2:B, 8oq2:C, 8oq2:D, 8oq2:E, 8oq2:F, 3wr5:B, 3wr5:C
22 6t9w:B 383 290 0.2485 0.2141 0.2828 1.01e-22 8bxx:AA, 8bxx:BB, 8bxx:CC, 8bxx:DD, 6t9w:A, 6t9w:C, 6t9x:B, 6t9x:A, 6t9x:C, 6t9x:D, 6tb6:B
23 6cdf:A 333 275 0.2515 0.2492 0.3018 1.84e-22 8ari:A, 8ari:G, 8ari:D, 8ari:F, 8ari:E, 8ari:J, 8ari:H, 8ari:K, 8ari:I, 8ari:P, 8ari:L, 8ari:M, 8ari:N, 8ari:T, 8ari:O, 8ari:Q, 8ari:R, 8ari:U, 8ari:S, 8ari:X, 8ari:B, 8ari:C, 8ari:V, 8ari:W, 6cdr:A, 1hku:A, 1hl3:A, 2hu2:A, 7kwm:A, 4lce:A, 1mx3:A, 4u6q:A, 4u6s:A, 6v89:A, 6v8a:A
24 2w2l:A 346 273 0.2364 0.2254 0.2857 2.21e-22 2w2l:B, 2w2l:C, 2w2l:D
25 2p9e:A 406 326 0.2727 0.2217 0.2761 2.73e-22 2p9c:A, 2p9c:B, 2p9e:B, 2p9e:C, 2p9e:D, 2p9g:A, 2p9g:B, 2pa3:A, 1psd:A, 1psd:B, 1sc6:A, 1sc6:B, 1yba:A, 1yba:B, 1yba:C, 1yba:D
26 2gsd:A 399 309 0.2545 0.2105 0.2718 4.10e-22
27 7arz:A 361 276 0.2303 0.2105 0.2754 2.55e-21
28 1dxy:A 330 223 0.1970 0.1970 0.2915 2.80e-20
29 3jtm:A 351 266 0.2182 0.2051 0.2707 6.75e-20 3n7u:A, 3n7u:B, 3n7u:C, 3n7u:D, 3n7u:E, 3n7u:F, 3n7u:G, 3n7u:H, 3n7u:I, 3n7u:J, 3n7u:K, 3n7u:L
30 8grv:A 336 265 0.2000 0.1964 0.2491 8.49e-20
31 4xkj:A 332 272 0.2636 0.2620 0.3199 1.19e-19 4xkj:B
32 6ttb:A 331 245 0.2061 0.2054 0.2776 2.69e-19
33 5z21:B 331 306 0.2455 0.2447 0.2647 8.84e-19 5z21:A, 5z21:C, 5z21:D
34 7ya3:B 384 209 0.1758 0.1510 0.2775 1.73e-18 7ya3:A, 7ya4:A, 7ya4:B
35 1sc6:D 384 303 0.2485 0.2135 0.2706 3.85e-17 1sc6:C
36 6d4b:A 361 246 0.2121 0.1939 0.2846 4.54e-17 6d4b:B, 6d4c:A, 6d4c:B, 5dn9:A, 5dn9:B
37 4xyb:A 384 252 0.2273 0.1953 0.2976 1.27e-16 4xyb:B, 4xye:A, 4xye:B
38 6p2i:A 307 271 0.2030 0.2182 0.2472 1.97e-16 6p2i:B
39 4prl:A 330 269 0.2303 0.2303 0.2825 1.85e-15 4prl:B
40 4njm:A 303 228 0.1636 0.1782 0.2368 4.63e-15 4njm:B, 4njo:A
41 3kbo:A 312 182 0.1697 0.1795 0.3077 6.64e-15 3kbo:B, 3kbo:C, 3kbo:D
42 5mh5:A 308 260 0.2152 0.2305 0.2731 1.22e-14 5mh5:B, 5mh6:A, 5mh6:B, 5mh6:C, 5mh6:D, 5mha:A, 5mha:B
43 5vg6:B 315 138 0.1606 0.1683 0.3841 1.26e-14 5vg6:A, 5vg6:C, 5vg6:D, 5vg6:E, 5vg6:F, 5vg6:G, 5vg6:H, 5vg6:I, 5vg6:J
44 2yq5:C 331 276 0.2030 0.2024 0.2428 4.67e-14 2yq5:A, 2yq5:B, 2yq5:D
45 6t8y:BBB 375 251 0.2182 0.1920 0.2869 1.77e-13 6t8y:AAA, 6t8y:CCC, 6t8y:DDD, 6t8z:AAA, 6t8z:BBB, 6t8z:CCC, 6t8z:DDD, 6t92:AAA, 6t92:BBB, 6t92:CCC, 6t92:DDD, 6t94:AAA, 6t94:BBB, 6t94:CCC, 6t94:DDD
46 7jqh:A 313 194 0.1697 0.1789 0.2887 5.17e-13 7jqi:A, 7jqj:A, 6ovl:A, 6oxn:A, 6p35:A
47 5dt9:A 379 266 0.2182 0.1900 0.2707 9.74e-13
48 4weq:A 316 260 0.2182 0.2278 0.2769 2.82e-12 4z0p:A
49 3oet:H 378 226 0.1909 0.1667 0.2788 9.55e-12 3oet:A, 3oet:B, 3oet:C, 3oet:D, 3oet:E, 3oet:F, 3oet:G
50 5bqf:A 317 276 0.2182 0.2271 0.2609 3.68e-10 5tsd:A, 5tsd:B, 4xcv:A
51 4zqb:B 316 186 0.1576 0.1646 0.2796 5.19e-10 4zqb:A
52 8j3p:A 374 281 0.1879 0.1658 0.2206 6.90e-10 8j3o:A, 8j3o:B, 8j3o:C, 8j3o:D, 8j3p:B, 8j3p:C
53 2o4c:A 380 106 0.1333 0.1158 0.4151 1.33e-08 2o4c:B
54 1qp8:A 301 188 0.1576 0.1728 0.2766 5.90e-07 1qp8:B
55 5je8:B 294 63 0.0545 0.0612 0.2857 0.37 5je8:A, 5je8:C, 5je8:D
56 3zwa:A 727 132 0.1030 0.0468 0.2576 0.56 5mgb:A, 5mgb:B, 5omo:A, 5omo:B, 2x58:A, 2x58:B, 6z5f:AAA, 6z5f:BBB, 6z5o:AAA, 6z5v:AAA, 6z5v:BBB, 6zib:AAA, 6zib:BBB, 6zic:AAA, 6zic:BBB, 3zw9:A, 3zw9:B, 3zwa:B, 3zwb:A, 3zwb:B, 3zwc:A, 3zwc:B
57 7wr3:A 794 93 0.0576 0.0239 0.2043 0.76 7wr3:B, 7wr5:A
58 6k52:A 428 56 0.0576 0.0444 0.3393 2.4 6k54:A, 6k54:B, 6k54:C, 6k55:A, 6k55:B, 6k55:C
59 2vhw:E 373 102 0.0879 0.0777 0.2843 2.6 4lmp:A, 6o7f:A, 2vhv:A, 2vhv:B, 2vhw:A, 2vhw:B, 2vhw:C, 2vhw:D, 2vhw:F, 2vhx:A, 2vhx:B, 2vhx:C, 2vhx:D, 2vhx:E, 2vhx:F, 2vhz:A, 2vhz:B, 2voj:A, 2voj:C, 2voj:E
60 8e59:A 1230 42 0.0515 0.0138 0.4048 2.9 8e5a:A, 8e5b:A, 7uhf:A, 7uhg:A
61 2f9w:A 249 50 0.0515 0.0683 0.3400 3.5 2f9w:B
62 8eoi:K 1116 34 0.0394 0.0116 0.3824 5.6
63 8wea:A 1206 34 0.0394 0.0108 0.3824 5.6
64 8fhs:A 1282 34 0.0394 0.0101 0.3824 5.7 8eog:K, 8fd7:K, 8hlp:A, 8hma:E, 8hmb:D, 8we6:A, 8we7:A, 8we8:A, 8we9:A
65 2i9p:B 296 100 0.0788 0.0878 0.2600 10.0 2i9p:A, 2i9p:C, 2i9p:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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